1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggggtcttatttcgtattcatttcatgcaaacagtaaataattaaacttggttgaaaagtttaattttcatagttttaactaggaaaacactcatgtagGTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTTGGAGCCGGACCAGGATGCTTTAGCAGAGCTGAAAGATGTCGGTTTGCAG
species | Zea mays |
transcript | GRMZM2G011364_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAG GTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTTEST: gi|149096646|gb|EE182411.2|EE182411
genomic: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAGgcatgcactc ... actcatgtagGTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTT
EST: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAG GTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTTEST: gi|78081364|gb|DV509776.1|DV509776
genomic: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAGgcatgcactc ... actcatgtagGTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTT
EST: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAG GTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTTEST: gi|149070573|gb|EE158979.2|EE158979
genomic: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAGgcatgcactc ... actcatgtagGTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTT
EST: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAG GTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTTEST: gi|74244209|gb|DT652123.1|DT652123
genomic: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAGgcatgcactc ... actcatgtagGTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTT
EST: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAG GTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTTEST: gi|93284045|gb|EB676309.1|EB676309
genomic: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAGgcatgcactc ... actcatgtagGTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTT
EST: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAG GTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTTEST: gi|76929908|gb|DV172213.1|DV172213
genomic: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAGgcatgcactc ... actcatgtagGTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTT
EST: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAG GTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTTEST: gi|148965898|gb|EE016799.2|EE016799
genomic: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAGgcatgcactc ... actcatgtagGTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTT
EST: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAG GTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTTEST: gi|78083929|gb|DV512322.1|DV512322
genomic: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAGgcatgcactc ... actcatgtagGTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTT
EST: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAG GTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTT
genomic: GTCCACCCGCGTGGCGATGGCGTGTTCTGTGCCTTCCCCAACGGCTGCAGgcatgcactc ... actcatgtagGTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTT
aacttggttgaaaagtttaattttcatagttttaactaggaaaacactcatgtagGTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTTGGAGCCGGACCAGGATGCTTTAGCAGAGCTGAAAGATGTCGGTTTGCAG
ttttaac putative branch site (score: 38)
ttgaaaagtttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggggtcttatttcgtattcatttcatgcaaacagtaaataattaaacttggttgaaaagtttaattttcatagttttaactaggaaaacactcatgtagGTTGTATCGATGGGAATCACAGGAAGGAGAGGGACCACAGAGGTTGGCTTTGGAGCCGGACCAGGATGCTTTAGCAGAGCTGAAAGATGTCGGTTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - ttggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaaac