1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gcaagccttcgatttgtctttgttcttttacttctgtttgattgctcaagggggcactgatggttaattgtctgttttctgtgttctcgatgcagCAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAACAGAACCTGACGCCGGAAGAAATCGAGACCCTCGAATTCAATTTCATGA
species | Zea mays |
transcript | GRMZM2G011136_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTACACCATCCGGGCCTGGTACCTCCTCCAGTTCGAAGACCTCATG CAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAAEST: gi|211454006|gb|FL153959.1|FL153959
genomic: TGGAGTACACCATCCGGGCCTGGTACCTCCTCCAGTTCGAAGACCTCATGgcaagccttc ... ctcgatgcagCAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAA
EST: TGGAGTACACCATCCGGGCCTGGTACCTCCTCCAGTTCGAAGACCTCATG CAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAAEST: gi|71445898|gb|DR826948.1|DR826948
genomic: TGGAGTACACCATCCGGGCCTGGTACCTCCTCCAGTTCGAAGACCTCATGgcaagccttc ... ctcgatgcagCAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAA
EST: TGGAGTACACCATCCGGGCCTGGTACCTCCTCCAGTTCGAAGACCTCATG CAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAAEST: gi|211454007|gb|FL153960.1|FL153960
genomic: TGGAGTACACCATCCGGGCCTGGTACCTCCTCCAGTTCGAAGACCTCATGgcaagccttc ... ctcgatgcagCAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAA
EST: TGGAGTACACCATCCGGGCCTGGTACCTCCTCCAGTTCGAAGACCTCATG CAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAAEST: gi|211454008|gb|FL153961.1|FL153961
genomic: TGGAGTACACCATCCGGGCCTGGTACCTCCTCCAGTTCGAAGACCTCATGgcaagccttc ... ctcgatgcagCAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAA
EST: TGGAGTACACCATCCGGGCCTGGTACCTCCTCCAGTTCGAAGACCTCATG CAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAAEST: gi|13559022|gb|BG550377.1|BG550377
genomic: TGGAGTACACCATCCGGGCCTGGTACCTCCTCCAGTTCGAAGACCTCATGgcaagccttc ... ctcgatgcagCAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAA
EST: TGGAGTACACCATCCGGGCCTGGTACCTCCTCCAGTTCGAAGACCTCATG CAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAA
genomic: TGGAGTACACCATCCGGGCCTGGTACCTCCTCCAGTTCGAAGACCTCATGgcaagccttc ... ctcgatgcagCAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAA
attgctcaagggggcactgatggttaattgtctgttttctgtgttctcgatgcagCAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAACAGAACCTGACGCCGGAAGAAATCGAGACCCTCGAATTCAATTTCATGA
ttttctgtgttctc CT-rich tract
ttaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagccttcgatttgtctttgttcttttacttctgtttgattgctcaagggggcactgatggttaattgtctgttttctgtgttctcgatgcagCAACTGTACTCACTGTTTGATCCTGTTTCTGGTAAGGAGAGGTTACAGCAACAGAACCTGACGCCGGAAGAAATCGAGACCCTCGAATTCAATTTCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA