1 5' 3' | 2 5' 3' | 3 5' 3' |
...caactactgagctacatatatagtgaaatttccttgattctgccttattatatggattccttcacttgcaacaaaactgatttcctgtttatgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTCGTGTGGACAGACCTCCCAGACAATCTGGGCCTTCTCTCAGAATTTATG
species | Zea mays |
transcript | GRMZM2G011129_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|37394214|gb|CF634378.1|CF634378
genomic: GAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: TGAGAAGGCTGTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|5649975|gb|AI920335.1|AI920335
genomic: TGAGAAGGCTGTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: GCTGTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|13382019|gb|BG458694.1|BG458694
genomic: GCTGTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: GAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTA-AGGCTCTEST: gi|45846769|gb|CN070712.1|CN070712
genomic: GAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: AGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGCCTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|18179590|gb|BM380800.1|BM380800
genomic: AGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: TGAGCACTGTCGAGCAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|50337197|gb|CO532323.1|CO532323
genomic: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: GTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|148934224|gb|EC878245.2|EC878245
genomic: GTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|71761890|gb|DR959827.1|DR959827
genomic: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|40335533|gb|CK369603.1|CK369603
genomic: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: TGAGCACTGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|76017245|gb|DT944415.1|DT944415
genomic: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|93017347|gb|EB642867.1|EB642867
genomic: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|37385171|gb|CF629707.1|CF629707
genomic: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: TGAGCACTGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|71756576|gb|DR954513.1|DR954513
genomic: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|3157158|gb|AA979780.1|AA979780
genomic: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: GAGAANGCTGTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTEST: gi|44900775|gb|CK827320.1|CK827320
genomic: GAGAAGGCTGTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
EST: TGAGCACTGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAT GATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
genomic: TGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTATgtgagtttat ... atgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCT
tattatatggattccttcacttgcaacaaaactgatttcctgtttatgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTCGTGTGGACAGACCTCCCAGACAATCTGGGCCTTCTCTCAGAATTTATG
aactgat putative branch site (score: 118)
aacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caactactgagctacatatatagtgaaatttccttgattctgccttattatatggattccttcacttgcaacaaaactgatttcctgtttatgtggacagGATGTCAATGGAAGGCTTCTGACTGTAAATAAAGCAGCTCCTAGAGGCTCTCGTGTGGACAGACCTCCCAGACAATCTGGGCCTTCTCTCAGAATTTATG
- actactg
- - - - -agctaca
- - - - - - - - - - - - - - - - - - -ttctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattt