1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggtctgctaattcaatgctggttctcttgacatttgttcaaagtgtagcttcaatatatcttatggcatttaattgattacttggccctcttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATTGAGATGCAGTTTGCAACTAATCATGTTG
species | Zea mays |
transcript | GRMZM2G009940_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTAT CAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATEST: gi|31909769|gb|CD651085.1|CD651085
genomic: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTATgtatgtatta ... ttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAAT
EST: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTAT CAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATEST: gi|78106300|gb|DV524718.1|DV524718
genomic: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTATgtatgtatta ... ttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAAT
EST: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTAT CAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATEST: gi|76021078|gb|DT948248.1|DT948248
genomic: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTATgtatgtatta ... ttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAAT
EST: CTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCCTCA-CATCCTTAT CAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATEST: gi|78084860|gb|DV513253.1|DV513253
genomic: CTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCC-TCAACATCCTTATgtatgtatta ... ttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAAT
EST: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTAT CAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATEST: gi|149082933|gb|EE172168.2|EE172168
genomic: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTATgtatgtatta ... ttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAAT
EST: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTAT CAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATEST: gi|71438305|gb|DR819355.1|DR819355
genomic: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTATgtatgtatta ... ttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAAT
EST: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTAT CAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATEST: gi|74244969|gb|DT652883.1|DT652883
genomic: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTATgtatgtatta ... ttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAAT
EST: CTCCCCCTCAACATCCTTAT CAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATEST: gi|60343084|gb|DN210057.1|DN210057
genomic: CTCCCCCTCAACATCCTTATgtatgtatta ... ttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAAT
EST: ACAGGGGTCTCCCCCTCAACATCCTTAT CAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATEST: gi|78105169|gb|DV523587.1|DV523587
genomic: ACAGGGGTCTCCCCCTCAACATCCTTATgtatgtatta ... ttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAAT
EST: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTAT CAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAAT
genomic: GCTTTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTATgtatgtatta ... ttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAAT
tagcttcaatatatcttatggcatttaattgattacttggccctcttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATTGAGATGCAGTTTGCAACTAATCATGTTG
aattgat putative branch site (score: 53)
ccctcttgct putative PPT
atttaattgattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtctgctaattcaatgctggttctcttgacatttgttcaaagtgtagcttcaatatatcttatggcatttaattgattacttggccctcttgctggcagCAACAATGCAGGAGTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATTGAGATGCAGTTTGCAACTAATCATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
-gtctgct
- - - - - - -aatgctg
- - - - - - - - - - - - - -tgacatt
- - - - - - - - - - - - - - - - - - - - - - - agcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttacttg