Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacttgtaaatggctcatataaatctggtggacttgcatatgtttttttttcacttgatgattttctgtgccctttattgtaacttcatggtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCTGGCTTTGCTCCTTATGAGAAGCGTATCACCGAGCTTCTGAAGGTTGGCA

Basic information

species Zea mays
transcript GRMZM2G009936_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009936_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g38520.2 (Oryza sativa), 3'ss of exon 2
cacttgtaaatggctcatataaatctggtggacttgcatatgtttt-tttttcacttg--atgattttctgtgccctttat-tgtaacttcatggtgtatt------cagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCTGGCTTTGCTCCTTATGAGAAGCGTATCACCGAGCTTCTGAAGGTTGGCA
          |   | || | |  ||| |  |  |  || || |||    || ||| |  || |||| || |  | |||     || |||  |||  | ||      |||||| | || ||||||||| || | ||||||  | ||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| || |||||||
---------ttcaatgatttgatcctgctttatat-tatctgctttgcagtttactggccattatttcctattgcatttgcacttaccttgttggcatgttaatttgcagAAATCCACCAAGAGGGTGACCTTTGTCAGGAACTTGATCAGGGAGGTTGCTGGATTTGCTCCCTATGAGAAGCGTATCACTGAGCTTCTCAAAGTTGGCA

upper sequence: GRMZM2G009936_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G37840.1 (Glycine max), 3'ss of exon 2
--cacttgtaaa--tggctcatataaatctggt--ggacttgcatatgtttttttttcacttgatgattttctgtgccctttattgtaacttcatggtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCTGGCTTTGCTCCTTATGAGAAGCGTATCACCGAGCTTCTGAAGGTTGGCA
   | || | |   ||  |   |||||  |  |   ||| | || |  |||| |||| |  |     || | ||||  | | |   ||  || ||  |  |  |||||| |||  |||||||||  | | || |||  ||| || |||||||||||||| ||||| || ||||| |||||||| || ||| | ||||||||||| |
ttaaattatgatgctgtattggataaaaataattaagacatacagagattttgtttttatatc----ttatatgtggtcctaaaattatattgat--tcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGA

upper sequence: GRMZM2G009936_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA20G29990.3 (Glycine max), 3'ss of exon 2
-------cacttgtaaatggctcatataaatctggtggacttgcatatgtttttttttcacttgatgattttctgtgccctttattgtaacttcatggtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCTGGCTTTGCTCCTTATGAGAAGCGTATCACCGAGCTTCTGAAGGTTGGCA
         ||  |  |      | |||| |  |   | | | || |   ||| |||| |  |     || | ||||  | | ||  ||  || ||  |  |  |||||| |||  |||||||||  | | || |||  ||| || |||||||||||||| ||||| || ||||| |||||||| || ||| | ||||||||||| |
taattcatcctcatccactatagaaataattaagaaaggcat-cagaaactttgtttttatatc----ttatatgtggtcataatattatattgat--tcaaaacagAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGA

upper sequence: GRMZM2G009936_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT2G37600.2 (Arabidopsis thaliana), 3'ss of exon 1
cacttgtaaatggctcatataaatctggtggacttgcatatgtttttttttcacttgatgattttctgtgccctttattgtaacttcatggtgt-attcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCTGGCTTTGCTCCTTATGAGAAGCGTATCACCGAGCTTCTGAAGGTTGGCA
     ||   ||  |  |     |||| |  ||  |  | |  |||   |    ||| | |||   | |  |     || |   || ||  | |  || ||||| | |  ||||||       |  | ||    ||||| || || || |||||  | ||||||||||||||| | ||||| |||||||| |||||||| |
gttaagttggtgtttttttactctctgtttcacaagagtttcatttcactgactttggtaattcatt-tctcaagagttttgttttgatatttttgtttagAAAACGAGCAAGAGGACCATATTCATAAGAAAACTGATTAGGGAAGTAGCTGGAATGGCTCCTTATGAGAAGAGAATCACTGAGCTTCTCAAGGTTGGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211459788|gb|FL211161.1|FL211161
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211330292|gb|FL177683.1|FL177683
EST:     ATGTCKTCACCAAGCGCKAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACSAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|18181244|gb|BM382454.1|BM382454
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211459782|gb|FL211155.1|FL211155
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|67017920|gb|CO446669.1|CO446669
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32907413|gb|CF012226.1|CF012226
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|9794550|gb|BE552858.1|BE552858
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32907669|gb|CF012482.1|CF012482
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|15313766|gb|BI478946.1|BI478946
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGC-AGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|61236448|gb|DN586201.1|DN586201
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|67012106|gb|CO440855.1|CO440855
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211332465|gb|FL177705.1|FL177705
EST:     ATGTCGTCACCAAGCGCGASSTGCCTCTGCGCCCGTCCCACCGCAAGGGT                         AAAGCAACKAAKAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32866126|gb|CF005808.1|CF005808
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211305831|gb|FL092722.1|FL092722
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211459791|gb|FL211164.1|FL211164
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|8666101|gb|BE186917.1|BE186917
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211307850|gb|FL092728.1|FL092728
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCGGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211457268|gb|FL211152.1|FL211152
EST:     ATGTCGTCACCAAGCGCGA-STGCCTCTGCGCCCGTCCCACCGCAA-GGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|6654178|gb|AW267583.1|AW267583
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211305823|gb|FL092714.1|FL092714
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211519525|gb|FL441901.1|FL441901
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|18179234|gb|BM380444.1|BM380444
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32908944|gb|CF013757.1|CF013757
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAG-TTTTAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32917319|gb|CF022131.1|CF022131
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|83278771|gb|DV942779.1|DV942779
EST:     ATGTTGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32911562|gb|CF016374.1|CF016374
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211161340|gb|FL393724.1|FL393724
EST:     ATGTCGTCACCAAGCGCGAGCTGCCCCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211457269|gb|FL211153.1|FL211153
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|78027281|gb|DV495668.1|DV495668
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211305828|gb|FL092719.1|FL092719
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211305826|gb|FL092717.1|FL092717
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211459790|gb|FL211163.1|FL211163
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32908543|gb|CF013356.1|CF013356
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|15056962|gb|BI360934.1|BI360934
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|4314723|gb|AI438635.2|AI438635
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|33090967|gb|CF050961.1|CF050961
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|31664095|gb|CD573275.1|CD573275
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|8930332|gb|BE225096.1|BE225096
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32912606|gb|CF017418.1|CF017418
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCATTGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32911788|gb|CF016600.1|CF016600
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         ATTGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|108953539|gb|EC364765.1|EC364765
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211307853|gb|FL092731.1|FL092731
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|26559572|gb|CA831807.1|CA831807
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211459783|gb|FL211156.1|FL211156
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|5757243|gb|AI964530.1|AI964530
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|87157441|gb|DY402230.1|DY402230
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|4886046|gb|AI677166.1|AI677166
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCNCCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32944524|gb|CF049343.1|CF049343
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211462306|gb|FL211169.1|FL211169
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|15215510|gb|BI431315.1|BI431315
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32911787|gb|CF016599.1|CF016599
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211226438|gb|FL431897.1|FL431897
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|60356261|gb|DN223234.1|DN223234
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|4776275|gb|AI665278.1|AI665278
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|37397800|gb|CF636208.1|CF636208
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211307854|gb|FL092732.1|FL092732
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|15554140|gb|BI644138.1|BI644138
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|37378045|gb|CF625677.1|CF625677
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211305833|gb|FL092724.1|FL092724
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|28569024|gb|CB280899.1|CB280899
EST:     CCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: CCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|6742321|gb|AW313136.1|AW313136
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCGCCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTACT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211441558|gb|FL398429.1|FL398429
EST:     ATCTTTTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|15198762|gb|BI423469.1|BI423469
EST:     CGCCCGTCCCACCGC-AGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: CGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|113821458|gb|DW936710.1|DW936710
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCC
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCC
EST: gi|211462307|gb|FL211170.1|FL211170
EST:     ATGTCGTCACCAAGCGCGASCTGCCTCTGCGCCCGTCCCACCGCAA-GGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|58029751|gb|CX725178.1|CX725178
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211459795|gb|FL211168.1|FL211168
EST:     TGTCGTCACCAAGCGCGA-STGCCCTCTGCGCCCGTCCCACCGCAA-GGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: TGTCGTCACCAAGCGCGAGCTG-CCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|44681860|gb|CK786908.1|CK786908
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211459794|gb|FL211167.1|FL211167
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|16925814|gb|BM078882.1|BM078882
EST:     TCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: TCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|9952247|gb|BE638830.1|BE638830
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32907103|gb|CF011916.1|CF011916
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211305822|gb|FL092713.1|FL092713
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211462308|gb|FL211171.1|FL211171
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32944166|gb|CF048985.1|CF048985
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211330298|gb|FL177689.1|FL177689
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|15499169|gb|BI595682.1|BI595682
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32937383|gb|CF042202.1|CF042202
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211459793|gb|FL211166.1|FL211166
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32915423|gb|CF020235.1|CF020235
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGATTAGTGNGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|113701970|gb|EE679474.1|EE679474
EST:     ATGTCGTCACCAAGCGCGAGCTGCTTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211305827|gb|FL092718.1|FL092718
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211321619|gb|FL177626.1|FL177626
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|60336735|gb|DN203708.1|DN203708
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32936247|gb|CF041059.1|CF041059
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211380555|gb|FL437250.1|FL437250
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTYTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|76281147|gb|DV020715.1|DV020715
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|58029940|gb|CX725367.1|CX725367
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|5058643|gb|AI737119.1|AI737119
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCCCCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211305825|gb|FL092716.1|FL092716
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|15589959|gb|BI674575.1|BI674575
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211330295|gb|FL177686.1|FL177686
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211081572|gb|FL368304.1|FL368304
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211307852|gb|FL092730.1|FL092730
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|67023763|gb|CO452512.1|CO452512
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAAAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32909097|gb|CF013909.1|CF013909
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGC
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAA-GGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGC
EST: gi|211321625|gb|FL177632.1|FL177632
EST:     ATGTCGTCACCAAGCGCGA-STGCCTCTGCGCCCGTCCCACCGCAA-GGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211323791|gb|FL177640.1|FL177640
EST:     ATGTCGTCACCAAGCGCGASSTGCCTCTGCGCCCGTCCCACCGCAA-GGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|32856146|gb|CD995827.1|CD995827
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGG                         AAAGCATCGTAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTG
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAA-GGGGgtaagccaac ... gtgtattcagAAAGCAACG-AAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTG
EST: gi|31611937|gb|CD568559.1|CD568559
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211521830|gb|FL420751.1|FL420751
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT
EST: gi|211305834|gb|FL092725.1|FL092725
EST:     ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGG                         AAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTTATCAGAGAGGTTGCT
genomic: ATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 872

GGCGCCGCCGCAGCCGAAGTCGGGCCTCTTCGTGGGCATCAACAAGGGCCATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCTGGCTTTGCTCCTTATGAGAAGCGTATCACCGAGCTTCTGAAGGTTGGCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 673

GGCGCCGCCGCAGCCGAAGTCGGGCCTCTTCGTGGGCATCAACAAGGGCCATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCTGGCTTTGCTCCTTATGAGAAGCGTATCACCGAGCTTCTGAAGGTTGGCA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 565

GGCGCCGCCGCAGCCGAAGTCGGGCCTCTTCGTGGGCATCAACAAGGGCCATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCTGGCTTTGCTCCTTATGAGAAGCGTATCACCGAGCTTCTGAAGGTTGGCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 566

GGCGCCGCCGCAGCCGAAGTCGGGCCTCTTCGTGGGCATCAACAAGGGCCATGTCGTCACCAAGCGCGAGCTGCCTCTGCGCCCGTCCCACCGCAAGGGGgtaagccaac ... gtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCTGGCTTTGCTCCTTATGAGAAGCGTATCACCGAGCTTCTGAAGGTTGGCA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcacttgatgattttctgtgccctttattgtaacttcatggtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCTGGCTTTGCTCCTTATGAGAAGCGTATCACCGAGCTTCTGAAGGTTGGCA
                                ttgtaac  putative branch site (score: 566)
                            tttattgtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cacttgtaaatggctcatataaatctggtggacttgcatatgtttttttttcacttgatgattttctgtgccctttattgtaacttcatggtgtattcagAAAGCAACGAAGAGGGTGTCCATGGTCAGGGGCCTGATCAGAGAGGTTGCTGGCTTTGCTCCTTATGAGAAGCGTATCACCGAGCTTCTGAAGGTTGGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - ctggtgg
- - - - - - - - - - - - - - - -acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcatg