1 5' 3' | 2 5' 3' | 3 5' 3' |
gtagtttacttcctttgtatcttaagcttctcagcacctgcctactctgtcaatcttatccattttgcaatatactaaacaaccatcaattcaattgatttttgtttttaccttcattattgttgagagttgtgtcattcgttcagtgttaacattttagcactgccctgtgtaagcaatgtctcatttttctgttgcagAGCACTTGGACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAGAATCCGTCACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCA
species | Zea mays |
transcript | GRMZM2G009895_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTACATTCATGTTGGGCACATACCCAATGAGCACAATCTGGCGAAAGATG AGCACTTGGACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAGEST: gi|71432889|gb|DR813939.1|DR813939
genomic: CTACATTCATGTTGGGCACATACCCAATGAGCACAATCTGGCGAAAGATGgtagtttact ... tctgttgcagAGCACTTGGACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAG
EST: TTACATTCATGTTGGGCACATACCCAATGAGCACAATCTGGCGAAAGATG AGCACTTGGACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAGEST: gi|211375456|gb|FL445603.1|FL445603
genomic: CTACATTCATGTTGGGCACATACCCAATGAGCACAATCTGGCGAAAGATGgtagtttact ... tctgttgcagAGCACTTGGACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAG
EST: CTACATTCATGTTGGGCACATACCCAATGAGCACAATCTGGCGAAAGATG AGCACTTGGACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAGEST: gi|78023103|gb|DV491490.1|DV491490
genomic: CTACATTCATGTTGGGCACATACCCAATGAGCACAATCTGGCGAAAGATGgtagtttact ... tctgttgcagAGCACTTGGACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAG
EST: CTACATTCATGTTGGGCACATACCCAATGAGCACAATCTGGCGAAAGATG AGCACTTGGACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAG
genomic: CTACATTCATGTTGGGCACATACCCAATGAGCACAATCTGGCGAAAGATGgtagtttact ... tctgttgcagAGCACTTGGACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAG
gtgttaacattttagcactgccctgtgtaagcaatgtctcatttttctgttgcagAGCACTTGGACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAGAATCCGTCACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCA
tgttaac putative branch site (score: 486)
tctcatttttctgtt putative PPT
aacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttacttcctttgtatcttaagcttctcagcacctgcctactctgtcaatcttatccattttgcaatatactaaacaaccatcaattcaattgatttttgtttttaccttcattattgttgagagttgtgtcattcgttcagtgttaacattttagcactgccctgtgtaagcaatgtctcatttttctgttgcagAGCACTTGGACCCTATCAACGTTAAAATCGCGGAGCTGAAGGAAGTATTAGAATCCGTCACCGCCGAGCAGAAGTACCTAAAAGCACGCGAAGCTCGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT