1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcgcttctgacctctgattagtttacgcccttttggttttgttgttcatgtgcccctgttgttgatgatcacgtgccttgtgctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGGCACAGATGAAGAAGAC
species | Zea mays |
transcript | GRMZM2G009876_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|211143002|gb|FL390386.1|FL390386
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|211516347|gb|FL407295.1|FL407295
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|211452151|gb|FL396750.1|FL396750
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|101382315|gb|EB813213.1|EB813213
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|74232800|gb|DT640714.1|DT640714
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|211129107|gb|FL371425.1|FL371425
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCCCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|211527014|gb|FL385877.1|FL385877
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|101390908|gb|EB817389.1|EB817389
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|6918424|gb|AW399954.1|AW399954
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|67038385|gb|CO464715.1|CO464715
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|101392350|gb|EB818104.1|EB818104
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|211049010|gb|FL423464.1|FL423464
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAAAAACGCTATGCTGAGAAGEST: gi|211533317|gb|FL400722.1|FL400722
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|148953095|gb|EE152575.2|EE152575
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|31350057|gb|CD434414.1|CD434414
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|29946118|gb|CB815988.1|CB815988
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GC-AGCGCGAGGCCCGCGAGGTGCAC-GGCGCTCG-AGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAG-AGEST: gi|211133673|gb|FL369483.1|FL369483
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAAAAACGCTATGCTGAGAAGEST: gi|211159863|gb|FL403892.1|FL403892
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|76015209|gb|DT942379.1|DT942379
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|60351247|gb|DN218220.1|DN218220
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|88757436|gb|DY541577.1|DY541577
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|211113966|gb|FL427446.1|FL427446
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|149027253|gb|EE046450.2|EE046450
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|211258671|gb|FL369172.1|FL369172
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGEST: gi|211300841|gb|FL383944.1|FL383944
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
EST: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAAT TTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
genomic: GCAAGCGCGAGGCCCGCGAGGTGCACAGGCGCTCGAAGGATGCCCGCAATgtgcgcttct ... gctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAG
ttttgttgttcatgtgcccctgttgttgatgatcacgtgccttgtgctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGGCACAGATGAAGAAGAC
tgttgat putative branch site (score: 93)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcttctgacctctgattagtttacgcccttttggttttgttgttcatgtgcccctgttgttgatgatcacgtgccttgtgctgttgtagTTGATTGGTGCTAAGGGCAAGAGGTTCGCCAAGAAACGCTATGCTGAGAAGGCACAGATGAAGAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG