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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgtaccctttacctttacagagcctggttatttcatatccattagtttggatgaaatgcttctagtccagcgattgatttatcgctctgcctcccatccgcagCTGTTTGAGATGGGGCTGGAGCTCTCCCTCTCTCGCCTCAAGGCTCTTGCGAGGTACGCCTTTGGGATGGGCTTGCCTCAG

Basic information

species Zea mays
transcript GRMZM2G009715_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009715_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g42300.1 (Oryza sativa), 3'ss of exon 2
--------------------------------gtgggtg-taccctttacctttacagagcctggttattt----catatccattagtttggatgaa--atgcttctagtccagcgattgatttatcgctctgcctcccatccgcagCTGTTTGAGATGGGGCTGGAGCTCTCCCTCTCTCGCCTCAAGGCTCTTGCGAGGTACGCCTTTGGGATGGGCTTGCCTCAG
                                 ||  |  | | ||     |||  |     |  | ||||     ||  | |  | |     || |  || | |  | |  |  ||||||||  |  ||||| ||  |     ||| ||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||||||||||||||| |||||||||
gtaacttctttgttaactcttttgttaccattctgcattctgcactagggttttgtatgatttactcatttatcctatcacaaacaatgcaactggataatacattaatttgattgattgattggtgtctctggctttc-----cagTTGTTTGAGATGGGGCTGGAGCTCTCACTGTCTCGCCTTAAGGCTCTTGCCAGATACGCCTTTGGGATGGGTTTGCCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatgaaatgcttctagtccagcgattgatttatcgctctgcctcccatccgcagCTGTTTGAGATGGGGCTGGAGCTCTCCCTCTCTCGCCTCAAGGCTCTTGCGAGGTACGCCTTTGGGATGGGCTTGCCTCAG
                       gattgat  putative branch site (score: 4)
                                    ctctgcctcccatcc  putative PPT
                        attgatttat  TA-rich tract