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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctgatttagctcaaatcatgtttgaatttccttataatcgtgggctgggcattctgttcacgtgttttgcccactttgtgttgctaacagGAGATCAATTCATATTTTGCATTCTTGTTCGAATTGATTGTGGCACGGGCACCTTCGGTTGGATTAAATGTATCACTGAATCGCTATGATTTGTTCCATG

Basic information

species Zea mays
transcript GRMZM2G009571_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009571_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g47570.1 (Oryza sativa), 3'ss of exon 2
-------gtcctgatttagct--caaatcatgtttgaatttccttataat--cgtgggctgggcattctgttcacgtgttttgcccactttgtgttgctaacagGAGATCAATTCATATTTTGCATTCTTGTTCGAATTGATTGTGGCACGGGCACCTTCGGTTGGATTAAATGTATCACTGAATCGCTATGATTTGTTCCATG
        |  ||   |||||      |     ||||| ||| || || |  |   || ||||||||  ||||| |||   ||     ||||||||   ||||||| |||||||||||  | || || |||||||||||||||| |||||| | ||| || || || |||||||||||||| | ||| || ||||| ||||| |
gtccagatttttgccctagctgtttgcttgcacttgaaattctttttacttacaaaggttgggcatt--gttcaagtgacatg-----tttgtgttatcaacagGACATCAATTCATACCTGGCGTTTTTGTTCGAATTGATTGCGGCACGAGGACCATCAGTGGGGTTAAATGTATCACTTAGTCGATACGATTTCTTCCACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211427484|gb|FK992844.1|FK992844
EST:     ATAAATGCCATCTCACAAGAACACCGTATGGGAGGCGCTTTGCCAATGAG                         GAGATCAATTCATATTTTGCATTCTTGTTCGAATTGATTGTGGCACGGGCA
genomic: ATAAATGCCATCTCACAAGAACACCGTATGGGAGGCGCTTTGCCAATGAGgtcctgattt ... ttgctaacagGAGATCAATTCATATTTTGCATTCTTGTTCGAATTGATTGTGGCACGGGCA