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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcagtgtctcattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG

Basic information

species Zea mays
transcript GRMZM2G009412_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g33921.1 (Oryza sativa), 3'ss of exon 3
gtgcagtgtctcattttcctgtgttaggcttgctgttg-cacaaagtatt--gtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG
  | | | | ||||| ||  |  | | |||     ||| ||  ||  | |  || ||  |||   |  | |   |  |  || ||  | |    |   | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||  | |  |  |   |      |  ||| || |   ||   
--gtattatttcattgtcaagactcaagctgaaaattgtcatgaatcaatcagtatctttttagatgtgttgggtgctatcttac--attattattctttacagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAACTACCTACTGGATACTGAAGTTGTGGGTCTATTGTGCTT

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g33979.1 (Oryza sativa), 3'ss of exon 3
gtgcagtgtctcattttcctg--tgttaggcttgctgttg-cacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG
  | | | | ||||| ||  |  |     |||     ||  ||  ||  ||| | |  ||  ||| |     |  ||  | ||  | | |   || ||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||                                        
--gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctg-gatgtgttggatgctcacttgcataattgttctctg---cagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAA----------------------------------------

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
gtgcagtgtctcattttcctg--tgttaggcttgctgttg-cacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGA-TCGAACCTGTGG
  | | | | ||||| ||  |  |     |||     ||  ||  ||  ||| | |  ||  ||| |     |  ||  | ||  | | |   || ||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| || ||     || | || |||  |  | | |    | |  
--gtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattttgctg-gatgtgttggatgctcacttgcataattgttctctg---cagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGCTTGCTACCTA-CTGGATACTATAGTTGTTGGTCTAC

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g33860.1 (Oryza sativa), 3'ss of exon 3
gtgcagtgtctcattttcctgtgttaggcttgctgttg-cacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG
  | | | |  || | |   |  | | |||     ||  ||  ||  | | |||   || ||| |     |  ||  | |   | | |   |||||   |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||  | |  |  |   |      |  ||| || |   ||   
--gtatttttgcaatgtgaagattcaagctgaaaattctcatgaatcagtatctt-tttagatgtgttggatgctcacttacataattattctgtg---cagAGGTGCAAGCATTTTGAAATTGGTGGAGACAAGAAGGGCAAGGGAACGTCTCTTTTCTAAACTACCTACTGGATACTGAAGTTGTGGGTCTACTGTGCTT

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g33915.1 (Oryza sativa), 3'ss of exon 2
gtgcagtgtctcattttcctgtgttaggcttgctgttg-cacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG
  | | | |  || | |   |  | | |||     ||  ||  ||  | | |||   || ||| |     |  ||  | |   | | |   |||||   |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||                                        
--gtatttttgcaatgtgaagattcaagctgaaaattctcatgaatcagtatctt-tttagatgtgttggatgctcacttacataattattctgtg---cagAGGTGCAAGCATTTTAAAATTGGTGGAGACAAGAAGGGCAAGGGAACGTCTCTTTTCTAA----------------------------------------

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G08030.1 (Glycine max), 3'ss of exon 3
gtgca-gtgtctcattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG
||  | | ||||| |      || |     ||| | |||      || |||  || | | | |   |||  || |   |   |||  |   |       ||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||||| |||||                                         
gtataagcgtctcttcccgtcgtttcgtttttgtttttgt----cgttttga-tcgcgtggctgatgcttgctttcctccttctgtttttgcc----tgcagAGGTGCAAGCATTTTGAGATCGGTGGTGACAAGAAGGGAAAAGGAACCTCTCTGTTCTAG----------------------------------------

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
gtgcagtgtctcattttcctgtgttaggcttg-ctgttgcacaaagta-ttgtctcactt-tgattta-gctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCAT-------CGCCCATCTCGATGTTGGATCGAACCTGTGG--------------------------
             ||    | || ||  |    |  | |   |||||  |||| |  | | || | |  |   | |  ||  |  ||| ||    |||    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||  || |  ||       |||   | |  |||||  | | |   ||                             
------------gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G24930.1 (Glycine max), 3'ss of exon 3
gtgcagtgtctcattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttgatttagctcac-tctttcctgactgactcac----ctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG
      |   |     ||      ||   ||||   ||        |    |||| |    ||| |  ||| |  ||  ||  ||          |||| |  |||||||||||||| |||||||| ||||| ||||||||||| || |||||||||||||||||  |     ||      |  | || |   |      ||||  
------tacttttgcctcaaacagtaattttgccactgattcccaaacatgctcattgccgttttgaacacgtggttgatgcttgctatgtggttctgttttgcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAGGGAAAAGGAACATCTCTCTTCTAGATGGAATATTAGAATTTGCAATTTCACACACTCTCTGTAC

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA15G05670.1 (Glycine max), 3'ss of exon 3
gtgcagtgtctcattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttgattta-gctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG
             ||    | ||  | ||       || |     | |||  ||  | || | |  |   | |  ||  |   |        |||    |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||  ||    ||      |       ||   |   | |  || 
------------gttagtatatggaaagc-----aatggatgcttttttggttccatgtggtgtgtggctaatggttgttagttcctgtctatgttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAGTTTGAGAATTAGGATTTAGAGCTTTATGTTTCAGCAATGT

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 3
gtgcagtgtctcattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttgattta-gctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG
                    || |  ||   ||   || |     | |||  ||  | || | |  |   | |  ||  |   |        |||    |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||  ||    ||      |       ||   |   | |  || 
--------------------gtatatggaaagc-aatggatgcttttttggttccatgtggtgtgtggctaatggttgttagttcctgtctatgttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAGTTTGAGAATTAGGATTTAGAGCTTTATGTTTCAGCAATGT

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G19320.1 (Glycine max), 3'ss of exon 3
gtgcagtgtctcattttcctgtgttaggcttg-ctgttgcacaaagta-ttgtctcactt-tgattta-gctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG-
             ||    | || ||  |    |  | |   |||||  |||| |  | | || | |  |   | |  ||  |  ||| ||    |||    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||  || |  ||      || |    ||  || |   | |    
------------gttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTAT-GTTTCAGCAAT

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgcagtgtctcattttcctgtgttaggcttgct-gttgcacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTT--TCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG
             |          |||    | |  ||  ||    | ||||  |    | |||| ||| ||  | |  ||  |   |    | | |  ||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||||||  | |||||     |   |   ||   | | || ||  |
------------gtgcatagaacatagatcagttcattataccggat-ttgtaacttggtaattt-gcttacattgtgttggtttgtt---gtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATT--TTTGTACTTGCTG

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgcagtgtct-cattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCT-CATCGCCCATCT-CGATGTTGGATCGAACCTGTGG
  | | ||||| |    | ||   |||   ||| |  |   ||   | | |||||| ||   |||  || || ||||  ||  ||  |        |  |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||  |   ||  | |||| |  | ||   |      ||   
--gtaatgtctgcgacattct---ttacctttgttaat---cactctttagtctcagttctgttt--cttacactttg-tgtgtggttt-------ttgcagAGGTGCAAGCACTTTGAGATCGGTGGAGACAAGAAGGGAAAGGGAACATCTCTCTTTTAAGTTGTTGTTTCATCTATCTACTTTTTTTTGTTTTGTTTGG--

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv01s0011g02090.t01 (Vitis vinifera), 3'ss of exon 3
gtgcagtgtctcattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttg--atttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGT----TTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG
          ||| | || ||      | || || || |      | |||  |  |||||  |||| ||  | | |||      |  |      || |  |||||||||||||||||||||||||| || || |||||||| ||||| || ||||| || ||  |    |  |||| | |  | | | | |   |||   | |    
---------gtcagtgtcttgaccatagattactttttccttc--ttttggtttgctttggcatttggcatagtttttttattattgccattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGATAAGAAGGGAAAGGGCACTTCTCTATTTTAGATGGATTATTCATGGTCTTTTTTGCTATACTATCTTCCTT----

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 3
gtgcagtgtctcattttcctgtgttaggcttgctgt--tgcacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtc--acagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCA-TCGCCCATCTCGATGTTGGATCGAACCTGTGG
|| ||| |||| |   ||  |    |   ||  | |  |||     || ||    | |||   ||||    |||   |  |   ||   ||  || ||    |||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||| || |   |  | | |  ||| |   | |||  |  |   ||| |
gt-cagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgttgcaattgggttttgcagAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAGGAGGCAAACTTGGTCATTTTCGTCTTGC-TATATTATGTTG

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 3'ss of exon 4
gtgcagtgtctcattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctg-tgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG---
    | | | |||  |   | | ||| | | ||   |    ||| | || |       || ||         | |      |||  |||   | | |  |||||||||||||| |||||||| ||||| || |||||||| ||||| || ||||| || ||  || |  | |   ||      ||  || || | | |       
caaaaatttgtcaaatgtattttttaagttagcaaattttgaaactgtttttaataactgtttccaaatgaacctcagcttctg--tcattggattttgcagAGGTGCAAGCACTTTGAGATCGGTGGCGATAAGAAGGGGAAGGGCACTTCTCTATTTTAGATTGCAAAAC---CAGGCAATTGCAGGGTCCATCTTCCATTTT

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S6_198V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------------------------------------------------------------------------gtgcagtgtctcattttcctgtgttagg-----cttgctgttgcacaaagtattgtctcactttgatt-tagctcactctttcctgactgactcacc------tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCA--TCGCCCATCTCGATGTTGGATCGAACCTGTGG
                                                                                          || | |||| | | | | | ||  |      ||    || | |  |  |     |||||  ||   || | ||||       | || || ||        |      ||| | |||||||| ||||||||||| |||||||||||||| ||||| ||    |||||||| |   |||   | |   | |||| |  || |    |       
gtaattcaatctattttcttgctggtagttgattggtttgacaaatattcatgtggaattttgcaacggaattgtcattgtaggtgtaaccattctctcctgtccgtattttctgaaatctttatcatttcgccgatcaaataatcactaggaacgtaccccacttcaaagagtctaacacatgacttggtactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAGCTCTTCTAGGCAACTCGATTGGATTACCTCGCTTCTGAACTTTAGAGAG--

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S74_73V6.1 (Physcomitrella patens), 3'ss of exon 4
---------gtgcagtgtctcattttcctgtgttaggcttgctg-ttgcacaaagtattgtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG-
         |||| |   | | |  |  ||| |||| ||   || || |   ||  ||  ||   |||    | | || || ||   |  | |||      | | |  ||| | |||||||| || |||||||| |||||||||||||||||||| ||    || || |||  | |   ||    ||    |||||  |         ||| 
tggtttcgcgtgcggaagccc-tcatagtgttttagtctctttgcttacttgaacaatcctcaggcttcaggtga-ctaacact---caaagtga------tattttgcagCGCTGCAAGCACTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACCCAACTTTTTTAAACTACATGTC-TTAATTGAAATGTTAAAATTGTGGACTGGT

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------------------------------------------gtgcagtgtct---cattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttgatttagctcactctttcctgac-tgactcacctgtgtc----------acagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG--
                                                         || |    |||   |||  |   |  | | | |   |  | ||||   |||| ||||  ||   | |  ||| || ||  ||  | |||| | |  || |           |||| | |||||||| || ||||||||||||||||||||||| || ||||||   ||||| ||  | |   ||     |  | |   |  ||   |   ||  |  
gtgatttaatccgttttatcttagttttcggccatttacatttgcctaggaataagtgtccgacttctatgcataattgggactcaagttattttattcacattctattatctc--ttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATATA--ATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S115_63V6.1 (Physcomitrella patens), 3'ss of exon 4
gtgcagtgtctcattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttgatt-tagctcactctttcctgactgactcacct------gtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATC--GCCCATCTCGATGTTGGATCGAACCTGTGG
      |   |   | |   |||||| |  |  | |  | |||      || ||||  ||||     |||| | |     | || |  |           |    ||| | ||||||||||| |||||||| |||||||||||||||||||| ||    |||||||| |  || | ||  | ||| || ||   ||||  |    |    
-----ctccttttctctggggtgttacgtctcatttctctcaa---gcggtttcacaatgatcacccctcaatttgaagggcctaatacgtagtattaaattctgcagCGATGCAAGCATTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACTCAGCTCTTCTAGGCATCACGTCAGGTCCAACTAGAGTCTGGAGTGTTGATAA--

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
-------gtgcagtgtctcattttc-ctgtgttaggcttgctgttgcacaaagtattgtctcactttgat-ttagctcactctttcctg------actgactcacctg-tgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGT--TTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG
       || |  |      |   | || ||         ||| ||   |    |||    ||   |||| ||   |   || ||| ||            ||   |  | | |||| | |||||||| || ||||| || ||||||||||||||||||||||||   ||||||||     |  |  | |    |     | || ||  |         
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG--

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ05955 (Selaginella moellendorffii), 3'ss of exon 4
gtgcagtgtctcattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttgat-ttagctcactctttcctgactgactcacctgtgt-cacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCA---TCTCGATGTTGGATCGAACCTGTGG
                                                 ||   | |||  | || ||||   | |    || || ||  | ||      ||||||||||| || ||||| || ||||| ||||||||||||||||||||     | |||||||   | |      ||   |  |  | ||||||   |  |    
-------------------------------------------------gtgggatttttctctttgctcgtccctgatcga-tggctttcttgcaaatccagAGGTGCAAACACTTTGAAATCGGTGGTGACAAGAAGGGCAAGGGAACGAGCTTGTTCTAAGCG-CGCGCGATTCAATTTTCCTCTCTTGGATATGATGTTC--

upper sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ07113 (Selaginella moellendorffii), 3'ss of exon 4
gtgcagtgtctcattttcctgtgttaggcttgctgttgcacaaagtattgtctcactttgat-ttagctcactctttcctgactgactcacctgtgt-cacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCA---TCTCGATGTTGGATCGAACCTGTGG
                                                 ||   | |||  | || ||||   | |    || || ||  | ||      ||||||||||| || ||||| || ||||| ||||||||||||||||||||     | |||||||   | |      ||   |  |  | ||||||           
-------------------------------------------------gtgggatttttctctttgctcgtccctgatcga-tggctttcttgcaaatccagAGGTGCAAACACTTTGAAATCGGTGGTGACAAGAAGGGCAAGGGAACGAGCTTGTTCTAAGCG-CGCGCGATTCAATTTTCCTCTCTTGGATGATGTTCTC--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19436813|gb|BM953223.1|BM953223
EST:     TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGATAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|14529377|gb|BI096510.1|BI096510
EST:     TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGATAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|67022104|gb|CO450853.1|CO450853
EST:     TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|33096235|gb|CF056229.1|CF056229
EST:     TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACGTCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|32923496|gb|CF028308.1|CF028308
EST:     TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|32944449|gb|CF049268.1|CF049268
EST:     TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|166615670|gb|EG279121.1|EG279121
EST:     CTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGG
genomic: CTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGG
EST: gi|14208463|gb|BG842141.1|BG842141
EST:     TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|19436812|gb|BM953222.1|BM953222
EST:     TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGATAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|33094090|gb|CF054084.1|CF054084
EST:     GTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
genomic: GTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|19057470|gb|BM736122.1|BM736122
EST:     TGAAGCTGCAG-GCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGG-GCAAGCATTTTGAGATTGGTGGAGATAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|211127525|gb|FL066341.1|FL066341
EST:     TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|4217819|gb|AI391815.1|AI391815
EST:     TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|19057662|gb|BM736329.1|BM736329
EST:     TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGATAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
EST: gi|32920410|gb|CF025222.1|CF025222
EST:     TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAG                         AGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT
genomic: TGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCAATTAAGgtgcagtgtc ... tgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtctcactttgatttagctcactctttcctgactgactcacctgtgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGTTTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG
                                     gactcac  putative branch site (score: 2)
                                       ctcacct  CT-rich tract
          tttgattta  TA-rich tract