1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgtgtatatagggcatcagctgctcaactatctgttgttttgtgcatgctgtatctgaacgatggtgtttctgaactgcagGCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTT
species | Zea mays |
transcript | GRMZM2G009045_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGACTCAGCGACGGCTTCCCCAAGATCGTCAGGGCCGAGGGCTACGCAGG GCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTTEST: gi|13150488|gb|BG320810.1|BG320810
genomic: GGACTCAGCGACGGCTTCCCCAAGATCGTCAGGGCCGAGGGCTACGCAGGgtacgtgtat ... tgaactgcagGCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTT
EST: GGGCTCAGCGACGGCTTCCCCAAGATCGTCAGGGCCGAGGGCTACGCAGG GCTATTCAGAGGACTGGTTCCTCTTTTGGGGCGACAGATTCCTTEST: gi|149096561|gb|EE182315.2|EE182315
genomic: GGACTCAGCGACGGCTTCCCCAAGATCGTCAGGGCCGAGGGCTACGCAGGgtacgtgtat ... tgaactgcagGCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTT
EST: GGACTCAGCGACGGCTTCCCCAAGATCGTCAGGGCCGAGGGCTACGCAGG GCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTT
genomic: GGACTCAGCGACGGCTTCCCCAAGATCGTCAGGGCCGAGGGCTACGCAGGgtacgtgtat ... tgaactgcagGCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTT
actatctgttgttttgtgcatgctgtatctgaacgatggtgtttctgaactgcagGCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTT
tgtttct CT-rich tract
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgtatatagggcatcagctgctcaactatctgttgttttgtgcatgctgtatctgaacgatggtgtttctgaactgcagGCTATTCAGAGGACTGGTTCCTCTTTGGGGGCGACAGATTCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA