1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtctatttctcgcccctctctctctcaagttctcattgtgcacaatggatgttatggctgatctccatgtaccttgttgaagGCCGGGTGACACCATTCTTATTGCGGCTGGTGGTTCCCATGTTGCATGTAACATCCAAATAAAGAAGCCTATTTGCATA
species | Zea mays |
transcript | GRMZM2G009021_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGGAGCCTGGAGTTTATCCAGATCTCGAGGCTGCTGTTTCTGCTGCTAG GCCGGGTGACACCATTCTTATTGCGGCTGGTGGTTCCCATGTTGCATGTAAEST: gi|30087497|gb|CB885703.1|CB885703
genomic: ATGGAGCCTGGAGTTTATCCAGATCTCGAGGCTGCTGTTTCTGCTGCTAGgtctatttct ... cttgttgaagGCCGGGTGACACCATTCTTATTGCGGCTGGTGGTTCCCATGTTGCATGTAA
EST: ATGGAGCCTGGAGTTTATCCAGATCTCGAGGCTGCTGTTTCTGCTGCTAG GCCGGGTGACACCATTCTTATTGCGGCTGGTGGTTCCCATGTTGCATGTAAEST: gi|29945970|gb|CB815912.1|CB815912
genomic: ATGGAGCCTGGAGTTTATCCAGATCTCGAGGCTGCTGTTTCTGCTGCTAGgtctatttct ... cttgttgaagGCCGGGTGACACCATTCTTATTGCGGCTGGTGGTTCCCATGTTGCATGTAA
EST: ATGGAGCCTGGAGTTTATCCAGATCTCGAGGCTGCTGTTTCTGCTGCTAG GCCGGGTGACACCATTCTTATTGCGGCTGGTGGTTCCCATGTTGCATGTAAEST: gi|211502290|gb|FL183062.1|FL183062
genomic: ATGGAGCCTGGAGTTTATCCAGATCTCGAGGCTGCTGTTTCTGCTGCTAGgtctatttct ... cttgttgaagGCCGGGTGACACCATTCTTATTGCGGCTGGTGGTTCCCATGTTGCATGTAA
EST: ATGGAGCCTGGAGTTTATCCAGATCTCGAGGCTGCTGTTTCTGCTGCTAG GCCGGGTGACACCATTCTTATTGCGGCTGGTGGTTCCCATGTTGCATGTAA
genomic: ATGGAGCCTGGAGTTTATCCAGATCTCGAGGCTGCTGTTTCTGCTGCTAGgtctatttct ... cttgttgaagGCCGGGTGACACCATTCTTATTGCGGCTGGTGGTTCCCATGTTGCATGTAA
agttctcattgtgcacaatggatgttatggctgatctccatgtaccttgttgaagGCCGGGTGACACCATTCTTATTGCGGCTGGTGGTTCCCATGTTGCATGTAACATCCAAATAAAGAAGCCTATTTGCATA
ggctgat putative branch site (score: 79)
ccttgtt putative PPT
atgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctatttctcgcccctctctctctcaagttctcattgtgcacaatggatgttatggctgatctccatgtaccttgttgaagGCCGGGTGACACCATTCTTATTGCGGCTGGTGGTTCCCATGTTGCATGTAACATCCAAATAAAGAAGCCTATTTGCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC