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...tgctgctgaattactggctatatgtactttttagtaaaaaaagagacttggatgcaaataactccgttttatttctgatgtgattgtattttgttgccagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAA
species | Zea mays |
transcript | GRMZM2G008556_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|78082127|gb|DV510539.1|DV510539
genomic: TACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAGgtaatctccc ... ttgttgccagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|71426785|gb|DR807835.1|DR807835
genomic: TACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAGgtaatctccc ... ttgttgccagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|149109119|gb|EE190019.2|EE190019
genomic: TACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAGgtaatctccc ... ttgttgccagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|71431941|gb|DR812991.1|DR812991
genomic: TACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAGgtaatctccc ... ttgttgccagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTEST: gi|71448531|gb|DR829581.1|DR829581
genomic: TACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAGgtaatctccc ... ttgttgccagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
EST: TACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAG CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
genomic: TACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAGgtaatctccc ... ttgttgccagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCT
acttggatgcaaataactccgttttatttctgatgtgattgtattttgttgccagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAA
ttttgtt CT-rich tract
ttttatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctgctgaattactggctatatgtactttttagtaaaaaaagagacttggatgcaaataactccgttttatttctgatgtgattgtattttgttgccagCTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTCGAAAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
-gctgctg
- - - - - -tactggc
- - - - - - - - - -atatgta
- - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatt