1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tggtgtgtacccactatccaacgaagtaaagccattgcacttgatggtgagatggcctgtagtgtcggtacgctgagaagctttgctcttctgcgtgcagATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTACCTGGATCTGGACCTCAAGAAGTTCATGGACTCCTGCCCGGAGTTTGCT
species | Zea mays |
transcript | GRMZM2G008327_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG ATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTAEST: gi|87152029|gb|DY396818.1|DY396818
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctgcg ... ctgcgtgcagATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTA
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG ATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTAEST: gi|31362736|gb|CD447093.1|CD447093
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctgcg ... ctgcgtgcagATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTA
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG ATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTAEST: gi|7216555|gb|AW562677.1|AW562677
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctgcg ... ctgcgtgcagATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTA
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG ATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGNCTTCGAGTAEST: gi|6095562|gb|AW120229.1|AW120229
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctgcg ... ctgcgtgcagATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTA
EST: ATCCGCGAGATCTCTCTCCTGAAGGAGATGAACCACGGCAACATCGTCAG ATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTAEST: gi|22489528|gb|BU049451.1|BU049451
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctgcg ... ctgcgtgcagATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTA
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG ATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTAEST: gi|61118496|gb|DN559457.1|DN559457
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctgcg ... ctgcgtgcagATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTA
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG ATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTAEST: gi|22542942|gb|BU093380.1|BU093380
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctgcg ... ctgcgtgcagATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTA
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG ATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCEST: gi|93281356|gb|EB673620.1|EB673620
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctgcg ... ctgcgtgcagATTACATGATGTTGTCCACAGCGAGAAGCGCATATACC
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG ATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTA
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctgcg ... ctgcgtgcagATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTA
ggtgagatggcctgtagtgtcggtacgctgagaagctttgctcttctgcgtgcagATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTACCTGGATCTGGACCTCAAGAAGTTCATGGACTCCTGCCCGGAGTTTGCT
ctttgctcttctgc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtgtgtacccactatccaacgaagtaaagccattgcacttgatggtgagatggcctgtagtgtcggtacgctgagaagctttgctcttctgcgtgcagATTACATGATGTTGTCCACAGCGAGAAGCGCATATACCTTGTCTTCGAGTACCTGGATCTGGACCTCAAGAAGTTCATGGACTCCTGCCCGGAGTTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
tggtgtg
- - - - -cccacta
- - - - - - - - - caacgaa
- - - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - - - - gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcctgta