Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgcaatccccattatttgtgctgcattacttcatacattagttactgttgttgatcctgatggttcattatcaatactgtttgttgtttcatgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT

Basic information

species Zea mays
transcript GRMZM2G008232_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008232_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G26580.1 (Glycine max), 3'ss of exon 3
ctgcaatccccattatttgtgctgcattacttcatacattagttactgttgttgatcctgatggttcattatcaa--tactgtttgttgt---ttcatgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT
      |     | | | |||  |  ||      ||  || | | | |||    |||  | || |||      |   |  ||| | |  |   ||       |||| || || || |||||||| |||||||| |||||||||||||| || ||||||||| |||| |||||||| || || || |||
----tgtttgtgtcaatagtgtcgtgttctgaagtatttttggt-cagtttgaaatcaagttgattctactctaggtttttgtatatcatgactttgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT

upper sequence: GRMZM2G008232_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G09570.1 (Glycine max), 3'ss of exon 3
ctgcaatccccattatttgtgctgcattacttcatacattagttactgttgttgatcctgatggttcattatcaatact-gtttgttgt---ttcatgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT
      |     | | | ||      ||      ||  || | | | |||    |||  | || || | | |   |  | |||| |  |   ||       |||| || || || |||||||| |||||||| |||||||||||||| || ||||||||| |||| |||||||| || || || |||
---ttgtgtgtgtcaatagtatcatgttctgaagtatttttggt-cagtttgaaatcaagttgatttactctaggtttttgtttatcatgactttgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211053903|gb|FL039087.1|FL039087
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211335219|gb|FL322948.1|FL322948
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211062166|gb|FL359472.1|FL359472
EST:     TGGCAATGTTGATCTGCGCAAGAWAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211140146|gb|FL356433.1|FL356433
EST:     TGGCAATGTTGATCTGCGCAAGAWAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211282928|gb|FL312227.1|FL312227
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGTG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|60339041|gb|DN206014.1|DN206014
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|8318853|gb|BE025493.1|BE025493
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCATTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|14243038|gb|BG840782.2|BG840782
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211099408|gb|FL366876.1|FL366876
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         TGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|37384202|gb|CF629158.1|CF629158
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|16919403|gb|BM074173.1|BM074173
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211460459|gb|FL348754.1|FL348754
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211428176|gb|FL360597.1|FL360597
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211101646|gb|FL354091.1|FL354091
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211149393|gb|FL319852.1|FL319852
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211013679|gb|FL365589.1|FL365589
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|5688738|gb|AI941753.1|AI941753
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211531489|gb|FL328404.1|FL328404
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|16916798|gb|BM072995.1|BM072995
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211007902|gb|FL358956.1|FL358956
EST:     TGGCAATGTTGATCTGCGCAAGAWAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211253323|gb|FL352234.1|FL352234
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|78543770|gb|DV621268.1|DV621268
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|213175109|gb|FM181707.1|FM181707
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|60359048|gb|DN226021.1|DN226021
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|60348716|gb|DN215689.1|DN215689
EST:     TGGCAATGTTGATTTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211157235|gb|FL334268.1|FL334268
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGYTAAACAAATCGAGGAYGCGTTCAAAGAATTYACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|12046517|gb|BF728656.1|BF728656
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCATTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|8318852|gb|BE025492.1|BE025492
EST:     TGGCAATGTTGATCTGTGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCATTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211094385|gb|FL362909.1|FL362909
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211098079|gb|FL308902.1|FL308902
EST:     TGGCAATGTTGATCTGCGCAAGAWAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|9742821|gb|BE518969.1|BE518969
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|45568036|gb|CK985870.1|CK985870
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211397944|gb|FL165812.1|FL165812
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211326750|gb|FL338498.1|FL338498
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|161588379|gb|EY958421.1|EY958421
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211435686|gb|FL350107.1|FL350107
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|37387305|gb|CF630845.1|CF630845
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|84980633|gb|DW530982.1|DW530982
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|60336696|gb|DN203669.1|DN203669
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|40302858|gb|CK347245.1|CK347245
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|6695648|gb|AW288756.1|AW288756
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCATTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|15499545|gb|BI596058.1|BI596058
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211397945|gb|FL165813.1|FL165813
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAAT
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAAT
EST: gi|8383191|gb|BE056134.1|BE056134
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCATTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|60344408|gb|DN211381.1|DN211381
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211103208|gb|FL316249.1|FL316249
EST:     TGGCAATGTTGATCTGCGCAAGAWAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|5608118|gb|AI901785.1|AI901785
EST:     TGGCAATGTTGATCTGCGCAAGAAAAGCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211397947|gb|FL165815.1|FL165815
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211397949|gb|FL165817.1|FL165817
EST:     GGCAATGTTGATCTGCGCAAGAATAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: GGCAATGTTGATCTGCGCAAGAA-AACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|6696002|gb|AW289110.1|AW289110
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCATTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211455717|gb|FL365505.1|FL365505
EST:     TGGCARTGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211397943|gb|FL165811.1|FL165811
EST:     TGGCAATGTTGATCTGCGCAAGAWAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211222799|gb|FL343761.1|FL343761
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|32863646|gb|CF003328.1|CF003328
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|47962347|gb|CN845056.1|CN845056
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|15590273|gb|BI674889.1|BI674889
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|4886118|gb|AI677238.1|AI677238
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211397946|gb|FL165814.1|FL165814
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211497191|gb|FL310114.1|FL310114
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211397950|gb|FL165818.1|FL165818
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|60342979|gb|DN209952.1|DN209952
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|26455833|gb|CA827416.1|CA827416
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211470674|gb|FL353020.1|FL353020
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|37377344|gb|CF625269.1|CF625269
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211059845|gb|FL039109.1|FL039109
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|14242887|gb|BG840218.2|BG840218
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|60342748|gb|DN209721.1|DN209721
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|108953748|gb|EC364871.1|EC364871
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211529121|gb|FL350184.1|FL350184
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACT                         AGACGACAGTTAAACAAATCGAGGATGCATTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211541441|gb|FL362035.1|FL362035
EST:     TGGCAATGTTGATCTGCGCAAGARAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211274167|gb|FL331318.1|FL331318
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211419074|gb|FL312380.1|FL312380
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|40335019|gb|CK369089.1|CK369089
EST:     GCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: GCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|37392410|gb|CF633454.1|CF633454
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211053900|gb|FL039084.1|FL039084
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|37379190|gb|CF626327.1|CF626327
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|211316711|gb|FL359234.1|FL359234
EST:     TGGCAATGTTGATCTGCGCAAGAWAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
EST: gi|60400047|gb|DN232854.1|DN232854
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 526

GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1171

GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 744

GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1217

GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGCAAGAAAACCAACTACCTCCTCGTCGACAACAgtgagtgaaa ... catgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttgttgatcctgatggttcattatcaatactgtttgttgtttcatgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT
          tcctgat  putative branch site (score: 1217)
                                       ttgtttc  putative PPT
                      attatcaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctgcaatccccattatttgtgctgcattacttcatacattagttactgttgttgatcctgatggttcattatcaatactgtttgttgtttcatgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - gtgctgc
- - - - - - - - - - - - - - - - catacat
- - - - - - - - - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt