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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcagacagatcacacactcttgtgctttttaatgctctgtctgctcgtcctactgtggagctggtcccttcatcttttggttcattgagatcagttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG

Basic information

species Zea mays
transcript GRMZM2G008209_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78120328|gb|DV538712.1|DV538712
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|211537799|gb|FL107888.1|FL107888
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|71437508|gb|DR818558.1|DR818558
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|71318841|gb|DR796181.1|DR796181
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|74243666|gb|DT651580.1|DT651580
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTT-CTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|91875001|gb|EB404958.1|EB404958
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|76014964|gb|DT942134.1|DT942134
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|89761605|gb|DY689549.1|DY689549
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|91871996|gb|EB401953.1|EB401953
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGGCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|71307844|gb|DR790143.1|DR790143
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|89757275|gb|DY686946.1|DY686946
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|148936771|gb|EC880907.2|EC880907
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
EST: gi|78118463|gb|DV536848.1|DV536848
EST:     CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGA                         GTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
genomic: CGCTACATCGACAATTTTAGCTCCGGCCAGCGCGGTGCCGCCTCCACCGAgtaggcagac ... ttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctactgtggagctggtcccttcatcttttggttcattgagatcagttcaatgcagGTATTTTCTTAAGGCCGGCTACGCTGTCATCTTCATCCATCGCCG
                      atctttt  TA-rich tract