Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaattttctttttcttttttggccatcacataagctgaagcctatatatacacttgttatctttattgtctcaactggagctggtgttctgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAA

Basic information

species Zea mays
transcript GRMZM2G007915_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007915_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g16540.1 (Oryza sativa), 3'ss of exon 2
--ctaattttctttttcttttttggccatcacataagctgaagcctatatatacacttgttatctttattgtctcaactggagctg-gtgttctgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAA
    |  ||| ||| ||| ||||| |  |  |||  | |      | | | |    || |||||||  |  |||| |   | |||   ||| ||    ||||| |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| ||| |||||||| ||||| ||||| || |||||||||
attcacgtttgtttgtctgttttgac-gtttcat--gtttgtatttgtgttttttattattatcttattcatctcgataagtgctacatgtactctcttacagGGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTTGCTGCAAAGAGGGTTATGGAGCGAGTTAGTGGAGTGAACATTGTTCCACATTTCTGTAGGATTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211126342|gb|FL147241.1|FL147241
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126347|gb|FL147246.1|FL147246
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAAGCTGAAGTAGCAGCGAAG
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAG
EST: gi|148940271|gb|EC885047.2|EC885047
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126341|gb|FL147240.1|FL147240
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211127274|gb|FL147261.1|FL147261
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126350|gb|FL147249.1|FL147249
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAAGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126343|gb|FL147242.1|FL147242
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAAGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|76917087|gb|DV166673.1|DV166673
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|71431174|gb|DR812224.1|DR812224
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|149099069|gb|EE185089.2|EE185089
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211127266|gb|FL147253.1|FL147253
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAAGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|78116520|gb|DV534907.1|DV534907
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211127270|gb|FL147257.1|FL147257
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211127273|gb|FL147260.1|FL147260
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAAGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126352|gb|FL147251.1|FL147251
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATTTTGGGAAGTCCAAAGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211127276|gb|FL147263.1|FL147263
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211127271|gb|FL147258.1|FL147258
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAAGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|71439588|gb|DR820638.1|DR820638
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126339|gb|FL147238.1|FL147238
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCYGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|22545492|gb|BU097851.1|BU097851
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGATGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126345|gb|FL147244.1|FL147244
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAAGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211127269|gb|FL147256.1|FL147256
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|78080951|gb|DV509363.1|DV509363
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|78084926|gb|DV513319.1|DV513319
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|71440225|gb|DR821275.1|DR821275
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126349|gb|FL147248.1|FL147248
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|76287587|gb|DV027155.1|DV027155
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|78124196|gb|DV542580.1|DV542580
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|148931543|gb|EC874605.2|EC874605
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211127268|gb|FL147255.1|FL147255
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAAGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126346|gb|FL147245.1|FL147245
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211127275|gb|FL147262.1|FL147262
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGANGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126340|gb|FL147239.1|FL147239
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAAGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126351|gb|FL147250.1|FL147250
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAAGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|148942975|gb|EC888022.2|EC888022
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211127278|gb|FL147265.1|FL147265
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126344|gb|FL147243.1|FL147243
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAG
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAG
EST: gi|211127267|gb|FL147254.1|FL147254
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAG
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAG
EST: gi|71419962|gb|DR804958.1|DR804958
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|211126348|gb|FL147247.1|FL147247
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAAGCTGAAGTAGCAGCGAAGANGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|148931538|gb|EC874596.2|EC874596
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
EST: gi|71311094|gb|DR791861.1|DR791861
EST:     GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAG                         AGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT
genomic: GATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 184

AGCTCCTCAAGGACCTGGCTCTCTCCGGGTTTAAGAAACTGCACGTCATTGATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAA


Block sizes: 47 (upstream exon), 47 (downstream exon)
Score: 106

AGCTCCTCAAGGACCTGGCTCTCTCCGGGTTTAAGAAACTGCACGTCATTGATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAA


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 105

AGCTCCTCAAGGACCTGGCTCTCTCCGGGTTTAAGAAACTGCACGTCATTGATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAA


Block sizes: 44 (upstream exon), 47 (downstream exon)
Score: 140

AGCTCCTCAAGGACCTGGCTCTCTCCGGGTTTAAGAAACTGCACGTCATTGATATGGACACCATAGACGTCTCCAACCTCAATCGCCAGTTTCTCTTCAGgtccttacgg ... tgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatacacttgttatctttattgtctcaactggagctggtgttctgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAA
                                          ttctgct  CT-rich tract
         ttgttatctttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctaattttctttttcttttttggccatcacataagctgaagcctatatatacacttgttatctttattgtctcaactggagctggtgttctgctgtacagAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAA

- - - - - - - - - - - -ccatcac
- - - - - - - - - - - - - - - - - gctgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctggtg