Sequence
atgc intronic sequence ATGC exonic sequence...attttccatttctactatttgtattgtatattatttatttgtattaatagttaatgtagttcaagtggacgtcagaacgctaacatagctgtgaccacagGATGATGACGATTTACTACAGCAGGCACTTGCAATGTCAATGGAGGGTGGTGCTTCAGGATCTGTAGCTGTGACTGACTCTGCTATGGCAGAAGCCGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G007884_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 6
attttccatttctacta-tttgtattgtatattatttatttgtattaatagttaatgtagttcaagtggacgtcagaacgctaacatagctgtg-----accacagGATGATGACGAT------TTACTACAGCAGGCACTTGCAATGTCAATGGAGGGTGGTGCTTCAGGATCTGTAGCTGTGACTGACTCTGCTATGGCAGAAGCCGGTG
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---tttcatttcaattagtatgcatcagatattg---atttatctgagttgagaatgctgtttagatggacaagagttggctaatatagatgtgatgtgatcacagGAAGATGATGATGCTCAGCTACTACAACAGGCTCTTGCAATGTCAATGGAGGAGGGTTCTTCAGGGGCTGCAGC---GGCTGATGCTGCTATGGCAGAGGCTG---
upper sequence: GRMZM2G007884_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G05250.2 (Glycine max), 3'ss of exon 6
attttccatttctactatttgtattgtatattatttatttgtattaatagttaatgt-agttca-agtggacg-tcagaacgctaacatagctgtgaccacagGATGATGACGAT---TTACTACAGCAGGCACTTGCAATGTCAATGGAGGGTGGTGCTTCAGGATCTGTAGCTGTGACTGACTCTGCTATGGCAGAAGCCGGTG
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---ttgcttttggataagttctcttgttttaatttcattcttcccataaatcagtatcaggacatagtatttgatctgtgaactgattttcaaacaaaagcagGACGATGAGAATGCTCTTCTACAGCAGGCCCTTGCAATGTCAATGGATGATCCCACAATTAACCATGAAG---TGAGAGATACAGATATGTCTGAAGCAGCTG
upper sequence: GRMZM2G007884_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G08290.1 (Glycine max), 3'ss of exon 6
attttccatttctactatttgtattgtat--attatttatttgtat--taatagttaatgtagttcaagtggacgtcagaacgctaacatagctgtgaccacagGATGATGACGATTTACTACAGCAGGCACTTGCAATGTCAATGGAGGGTGGTGCTTCAGGATCTGTAGCTGTGACTGACTCTGCTATGGCAGAAGCCGGTG
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-ttgtgaaggcatattagatgtctaggcttgaaaattcacaaggaagatgggacttaacatagtattgttgttttttgtattgaccttcaaatggaaacagGATGATGAGAATGCCCTACTACAGCAGGCACTTGCAATGTCAATGGATGATTCTGCAATTAGCCATGA---TGTAAAAGATACAGATATGTCTGAAGCATCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatagttaatgtagttcaagtggacgtcagaacgctaacatagctgtgaccacagGATGATGACGATTTACTACAGCAGGCACTTGCAATGTCAATGGAGGGTGGTGCTTCAGGATCTGTAGCTGTGACTGACTCTGCTATGGCAGAAGCCGGTG
cgctaac putative branch site (score: 2)
ttaatgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attttccatttctactatttgtattgtatattatttatttgtattaatagttaatgtagttcaagtggacgtcagaacgctaacatagctgtgaccacagGATGATGACGATTTACTACAGCAGGCACTTGCAATGTCAATGGAGGGTGGTGCTTCAGGATCTGTAGCTGTGACTGACTCTGCTATGGCAGAAGCCGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - -tgtattg