1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcttgatatctagggcttttctttgatctcagtcgttctctgtggaggtggatttggactacctgcctgataggataattctctctggataactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCTTACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCT
species | Zea mays |
transcript | GRMZM2G007381_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAAANNNNNNNGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCEST: gi|71431746|gb|DR812796.1|DR812796
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
EST: CAAAANNNNNNNGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCEST: gi|211172115|gb|FK994020.1|FK994020
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
EST: CAAAANNNNNNNGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCEST: gi|211172114|gb|FK994019.1|FK994019
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
EST: CAAAANNNNNNNGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCEST: gi|78081936|gb|DV510348.1|DV510348
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
EST: CAAAANNNNNNNGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCEST: gi|71431745|gb|DR812795.1|DR812795
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
EST: CAAAANNNNNNNGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCEST: gi|211215511|gb|FL424481.1|FL424481
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
EST: CAAAANNNNNNNGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCEST: gi|29946817|gb|CB816340.1|CB816340
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
EST: CAAAANNNNNNNGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCEST: gi|22819231|gb|BU499321.1|BU499321
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
EST: CAAAANNNNNNNGCCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCEST: gi|16919478|gb|BM074211.1|BM074211
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
EST: CAAAANNNNNNNGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCEST: gi|211172116|gb|FK994021.1|FK994021
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
EST: CAAAANNNNNNNGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCEST: gi|211172113|gb|FK994018.1|FK994018
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
EST: CAAAANNNNNNNGCCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCEST: gi|211172112|gb|FK994017.1|FK994017
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
EST: CAAAANNNNNNNGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAG GTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
genomic: CAAAACCCCCCCGTCGGGTTCAAGCACAAGGTCTCCGATAACCTCCAAAGgtgccgcctt ... aactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGC
aggtggatttggactacctgcctgataggataattctctctggataactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCTTACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCT
ggataac putative branch site (score: 84)
ataattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgatatctagggcttttctttgatctcagtcgttctctgtggaggtggatttggactacctgcctgataggataattctctctggataactgaacagGTGGGTAATTGAGGTCACCGGAGCGGCGGGCACCCTTTACGCCGGCGAGGCTTACCAGTTGCAGGTTGACTTCCCTGAGCATTATCCTATGGAGGCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctga