Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttcactatcggactgtactcatgtctactatctgatcatgtcaaagttctgacaattcttattattttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC

Basic information

species Zea mays
transcript GRMZM2G007276_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g38550.1 (Oryza sativa), 3'ss of exon 2
gtaagcttcactatcggactgtactcatgtctactatctgatcatgtcaaagttctgacaattcttattattttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC
||||||||  |||| |             ||||  || |    || ||||  |||| |||    |||| || || |||||| ||||||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||| ||||| ||
gtaagctt-gctattga------------tctatgattttgctatatcaattttctaacagggtttataatgttcaattcttagTTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAGATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATAC

upper sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA12G06960.1 (Glycine max), 3'ss of exon 3
gtaagcttcactatcggact-gtactcatgtctactatctgatcatgtcaaagttctgacaattcttattattttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC
|| ||  |   | | | | | ||  |  ||  |    |   |  |  | |||||       ||  ||  | ||     ||  |||| ||||| ||||| || |||||||| || ||||||||||| |||||||| ||||| | |||||| |||||||| || || || |||||||| || || ||
gttagtgttttttttgaatttgtgattttgctttgatttgaactacatgaaagt------gatgttttctgttcaatttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATAC

upper sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA15G04470.2 (Glycine max), 3'ss of exon 3
gtaagcttcactatcggactgtactcatgtctact---atctgatcatgtcaaagttctgacaattcttattatt-ttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC
             | ||  ||  ||||| | || |   ||||     ||    |    ||| |||   |  |  | ||  |||  |||| || || |||||||| |||||||| || |||||||||||||| ||||| || || | |||||||||||||||||| || || ||||| || || || ||
------------gttggtttg-gctcatttttatttttatcttgctttgattgatacatgataatgaatgatgctgttccatttgcagTGTACCCCGATGGGCGAGTTTGCATATCAATTCTTCATCCACCCGGTGATGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATAC

upper sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA11G14980.1 (Glycine max), 3'ss of exon 3
gtaagcttcactatc---ggactgtactcatgtctactatctgatcatgtcaaagttctga-caattcttattattttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC
|| || ||   | |        |||  |  ||  |        |  |  | |||||  | |   ||  ||  | ||     ||  |||| ||||| ||||| || |||||||| || ||||||||||| |||||||| ||||| | |||||||||||||||||| || || |||||||| || || ||
gttagtttttttttttttaatttgtgattttgctttgataggaacaacatgaaagtgatcagtgatgtttcctgttcaatttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATAC

upper sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA13G40990.1 (Glycine max), 3'ss of exon 3
gtaagcttcactatcggactgtactcatgtctactatctgatcatgtcaaagttctgacaattcttattatt-ttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC
             | || ||| || ||| | |  ||||       |   ||    ||| | |   |  | || || ||||  |||| ||||| |||||||| |||||||| || ||||||||||| |||||||| || || | |||||||||||||||||| || || ||||| || || || ||
------------gttggtctg-acacattttttttatcctgcttcgattaatacatgaaattcaatgatgttgttcaatttgcagTGTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATAC

upper sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 3
lower sequence: AT3G46460.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagcttcactatcggactgtactcatgtctactatctgatcatgtcaaagttctgacaattct-------tatt-attttgaattct-cagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC
|| || |         |  | | | |   |   ||   ||||| |||   |||    |   || |       | ||  | |||   ||| |||||||||| ||||| || ||||| || |||||||| ||||| |||||||| ||||| ||||| |||||||||||||| || || ||||| || || |||||
gttagttctttctctcggttatgcgctcattagctcattgatcttgtttgagtagctaaggttttgtgaaaatgttcgtcttgtggtctgcagTTTATCCCGATGGCCGCGTTTGTATATCTATTCTACATCCTCCTGGTGATGATCCAAGTGGATATGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACAC

upper sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 3
lower sequence: AT5G59300.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------gtaagcttcactatcggactgtactcatgtctactatctgatcatgtcaaagttctgacaattcttattattttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC
                |  | ||    |||||       |       | |||      | | || |  | |||    | |  |||| ||       |||||||| | ||||| ||||||||||| |||||||||||||| || ||||| ||||| || |||||||||||||||||||| || ||||| || || || ||
gttagttttctctctatcggttttg--atcggggaaggattcaaaggaatatgaatagaagacagacgtttgaatggtttacttatatttgtcctgcagTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGTTGGACTCCTGTTCATAC

upper sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 3
lower sequence: AT3G55380.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaagcttcactatcggactgtactcatgtctactatctgatcatg--tcaaagttctgacaattcttattattttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC
|| |       |   |||   ||    | | |         | | |  | |   ||||||  |||  || | |||||| | |  ||||||| | |||||    ||||||||||||||||||||||| |||||||| |||||   ||| || ||||||||    ||||| ||||| || || || ||
gtgactgatttttctggaaaatatatctctttctcgagcttttaggatttagtcttctgatgatttatactcttttgactgc--agTTTATTCTGATGGAAAAGTTTGCATTTCTATTCTTCATCCTCCTGGTGATGATCCTCATGGATACGAGCTTGCCTCTGAACGTTGGACCCCTGTCCATAC

upper sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 3
lower sequence: Vv08s0007g00120.t01 (Vitis vinifera), 3'ss of exon 3
---------gtaagcttcac-tatcggactgtactcatg--tctactatctgatcatgtcaaagttctgacaattcttattattttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC
          || || || | |||     | ||   |||  | |   ||  || ||        | || |   | | || | | || || |  |||||||||| ||||| || |||||||| || ||| | ||||| |||||||| || || | ||| |||||||||||||| || || |||||||| || |||||
gttaacttcttatgcctctcatatacatatatatatatgaatttctcattggagcactctctgatgctaattgtacctact-tcttaaactg-cagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGGACCCAAATGGCTATGAGCTTGCAAGTGAGCGTTGGACACCTGTCCACAC

upper sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 3
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 3'ss of exon 3
---gtaagcttcactatcggactgtactcatgtctactatctgatcat---gtcaaagttctga--caattcttattattttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC
   |   | ||  | | | |  |||  |    | |    ||| | |||     ||  | |   |  ||| |    |  |     | |  |||||||||| ||||| || || ||||| || ||||| ||||| |||||||| || || | ||| |||||||||||||| || || ||||  ||| | || ||
gttggttgtttgtccaactgcatgtgtttgatttttgactcttaccattggagcatggcttgaaatcaacttggttcttgcatgaattacagTTTATCCAGATGGACGAGTATGCATATCAATTCTCCATCCTCCTGGTGAGGACCCAAATGGATATGAGCTTGCAAGTGAGCGCTGGATGCCAATCCATAC

upper sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 3
lower sequence: PP1S75_236V6.1 (Physcomitrella patens), 3'ss of exon 5
--------gtaagcttcactatcggactgtactcatgtctactatctgatcatgtcaaagttctgacaattcttatt----------attttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC
            | || ||| |  || || ||||||||    ||  |  || |  | | ||||||   |||   ||           | |||  ||   |||||||||| ||||| || ||||||||||| ||||| ||| | |||||||| ||||| | |||||||||  | || || || || ||| | || ||||| ||
gaaagaactctggtttgactct--gaatgcactcatgtgacttaatttttctttacgatgttctgcttatttccataccaatccttgacttttcatgtgcagTTTATCCTGATGGACGGGTTTGCATTTCAATTCTACATGCTCCTGGTGATGATCCAAATGGTTATGAATTGGCGAGTGAGCGTTGGTCTCCCGTGCATAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18174032|gb|BM349420.1|BM349420
EST:     ATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: ATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|16922884|gb|BM075876.1|BM075876
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18176640|gb|BM351573.1|BM351573
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGAATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18175663|gb|BM350894.1|BM350894
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|24769301|gb|CA404430.1|CA404430
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18166689|gb|BM336528.1|BM336528
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|60337599|gb|DN204572.1|DN204572
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|31354462|gb|CD438819.1|CD438819
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18171101|gb|BM340941.1|BM340941
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|28984790|gb|BQ539212.2|BQ539212
EST:     ATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: ATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18169841|gb|BM339681.1|BM339681
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|16925159|gb|BM078227.1|BM078227
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18168775|gb|BM338615.1|BM338615
EST:     CGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|6654285|gb|AW267690.1|AW267690
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|86470794|gb|DY237164.1|DY237164
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18172247|gb|BM347635.1|BM347635
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18173372|gb|BM348760.1|BM348760
EST:     CAACAGGCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18171575|gb|BM341415.1|BM341415
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18180978|gb|BM382188.1|BM382188
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18168569|gb|BM338409.1|BM338409
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18165129|gb|BM334968.1|BM334968
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|16919167|gb|BM074068.1|BM074068
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18172986|gb|BM348374.1|BM348374
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGAATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|32840342|gb|CD980023.1|CD980023
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18167757|gb|BM337597.1|BM337597
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18167433|gb|BM337272.1|BM337272
EST:     CCCGCCATCAGGAAGATTTACTTATGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|16927470|gb|BM080539.1|BM080539
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18164311|gb|BM334150.1|BM334150
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18162617|gb|BM332456.1|BM332456
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|88749489|gb|DY533630.1|DY533630
EST:     AGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: AGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|28986463|gb|CB351150.1|CB351150
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|16926031|gb|BM079099.1|BM079099
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|67038183|gb|CO464513.1|CO464513
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|88755883|gb|DY540024.1|DY540024
EST:     TAAGATTTACTTTTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: TAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18175654|gb|BM350889.1|BM350889
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18167677|gb|BM337517.1|BM337517
EST:     AGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: AGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|16922561|gb|BM075629.1|BM075629
EST:     CCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|86470638|gb|DY237008.1|DY237008
EST:     CCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|9953723|gb|BE640306.1|BE640306
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18174727|gb|BM350115.1|BM350115
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18173203|gb|BM348591.1|BM348591
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18162234|gb|BM332073.1|BM332073
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|40336181|gb|CK370251.1|CK370251
EST:     GGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: GGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|32839946|gb|CD979627.1|CD979627
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|8383338|gb|BE056281.1|BE056281
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|166597045|gb|EG301235.1|EG301235
EST:     CATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|16918596|gb|BM073819.1|BM073819
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|14244579|gb|BG840133.2|BG840133
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTAATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|5005651|gb|AI711713.1|AI711713
EST:     GGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: GGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|31558118|gb|CD527330.1|CD527330
EST:     CAACAGCCCGCCATCAGTAAGATTTTCTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18166297|gb|BM336136.1|BM336136
EST:     GGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: GGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|18172888|gb|BM348276.1|BM348276
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|16925088|gb|BM078156.1|BM078156
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|4804574|gb|AI665597.2|AI665597
EST:     CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: CAACAGCCCGCCATCAGTAAGATTTACTTCTGGGATGTGGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
EST: gi|37390413|gb|CF632436.1|CF632436
EST:     GGCATCCGAATG                         TTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG
genomic: GGCATCCGAATGgtaagcttca ... gaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctactatctgatcatgtcaaagttctgacaattcttattattttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC
                       ttctgac  putative branch site (score: 2)
                                                ttctc  putative PPT
                            acaattcttattattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcttcactatcggactgtactcatgtctactatctgatcatgtcaaagttctgacaattcttattattttgaattctcagTTTATCCGGATGGGCGTGTTTGCATTTCTATTCTTCATCCACCTGGTGAAGATCCCAGTGGTTATGAGCTTGCAAGCGAACGGTGGACACCAGTGCACAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA