1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cgtggttcacctcagtgtcttttattggcagcagaacaaaccgtctgctttctgattttaactgtcagtttgctaacatatgtcaagtttacacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA
species | Zea mays |
transcript | GRMZM2G007260_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCEST: gi|22521069|gb|BU079880.1|BU079880
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCEST: gi|211209639|gb|FL170007.1|FL170007
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCEST: gi|211212202|gb|FL170018.1|FL170018
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCEST: gi|211209646|gb|FL170014.1|FL170014
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCEST: gi|211416709|gb|FL320472.1|FL320472
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCEST: gi|211209638|gb|FL170006.1|FL170006
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCEST: gi|211209637|gb|FL170005.1|FL170005
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCEST: gi|149074449|gb|EE162844.2|EE162844
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCEST: gi|211209642|gb|FL170010.1|FL170010
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCEST: gi|211212201|gb|FL170017.1|FL170017
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCEST: gi|14701443|gb|BI233861.1|BI233861
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCEST: gi|20803162|gb|BQ294212.1|BQ294212
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
EST: GCCGGATGACACGCCGTGGGACGGAG GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGACGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
tgctttctgattttaactgtcagtttgctaacatatgtcaagtttacacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA
tgctaac putative branch site (score: 11)
tgattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtggttcacctcagtgtcttttattggcagcagaacaaaccgtctgctttctgattttaactgtcagtttgctaacatatgtcaagtttacacttgtagGCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - -gcagcag
- - - - - - - - - - - - - - - - - aacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctaa