1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgtggaatattcgttgacttgcgctaatggagacaattatttttgacactgtcagttttcatgttctcgttgatgtgtcaagaagtggtgcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCAAAAGCTGGAAATCTCATTCACAGAGGAGGAGATATGTGATCTCTTTGA
species | Zea mays |
transcript | GRMZM2G006790_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCEST: gi|211366894|gb|FL196959.1|FL196959
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTC
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCTAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCEST: gi|211366893|gb|FL196958.1|FL196958
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTC
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCTAATGGCGAAATAGATAAAGAGGAACTGAAGCATTGTTTTCEST: gi|211366887|gb|FL196952.1|FL196952
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTC
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCEST: gi|211366892|gb|FL196957.1|FL196957
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTC
EST: AAAATAGACGAGAGTTTCAGAAAATGCAAGACBSATCTTCGAACAGTTTG ATGAAGATTCAAATGGCGAAATAGATAAAGAGGAAEST: gi|74234338|gb|DT642252.1|DT642252
genomic: AAAATAGACGAGAGTTTCAGAAAATGCAAGACT-ATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAA
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCEST: gi|211203216|gb|FL341877.1|FL341877
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTC
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCAAATGGCGAAATAGAEST: gi|211023721|gb|FL334134.1|FL334134
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGA
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCTAATGGCGAAAATAGATAAAGAGGAACTGAAACATTGEST: gi|211366890|gb|FL196955.1|FL196955
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAA-TAGATAAAGAGGAACTGAAACATTG
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCEST: gi|211366891|gb|FL196956.1|FL196956
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTC
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCTAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCEST: gi|211366886|gb|FL196951.1|FL196951
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTC
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCTAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCEST: gi|148978865|gb|EE026354.2|EE026354
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTC
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCEST: gi|211162599|gb|FL365711.1|FL365711
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTC
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGAT-CAAATGGCGAAATAGATEST: gi|211366884|gb|FL196949.1|FL196949
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGAT
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCTAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCEST: gi|71428676|gb|DR809726.1|DR809726
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTC
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG AT-----T-CAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCEST: gi|71428675|gb|DR809725.1|DR809725
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTC
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAG-TT- -T---GATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCEST: gi|211366883|gb|FL196948.1|FL196948
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTC
EST: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTG ATGAAGATTCTAATGGCG
genomic: CAAAATAGACGAGAGTTTCAGAAAATGCAAGACTATCTTCGAACAGTTTGgtgagttctg ... gcttttgcagATGAAGATTCAAATGGCG
gacactgtcagttttcatgttctcgttgatgtgtcaagaagtggtgcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCAAAAGCTGGAAATCTCATTCACAGAGGAGGAGATATGTGATCTCTTTGA
tgctttt CT-rich tract
ttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtggaatattcgttgacttgcgctaatggagacaattatttttgacactgtcagttttcatgttctcgttgatgtgtcaagaagtggtgcttttgcagATGAAGATTCAAATGGCGAAATAGATAAAGAGGAACTGAAACATTGTTTTCAAAAGCTGGAAATCTCATTCACAGAGGAGGAGATATGTGATCTCTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT