1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgacaatgccatttgtttttcataatgcataattttaactgttgtataattgtattgtcgctgaattatgcatgacaatcagtaaacttatgcttgtagGTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGTGAGCAAAATCTGGAAGTTGCACCCTGA
species | Zea mays |
transcript | GRMZM2G006781_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG GTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGTEST: gi|211200211|gb|FK975792.1|FK975792
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... atgcttgtagGTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGT
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG GTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGTEST: gi|78113600|gb|DV531991.1|DV531991
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... atgcttgtagGTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGT
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG GTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGTEST: gi|211200210|gb|FK975791.1|FK975791
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... atgcttgtagGTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGT
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG GTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGTEST: gi|211200209|gb|FK975790.1|FK975790
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... atgcttgtagGTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGT
EST: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATG GTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGT
genomic: CCTTCGTCCGCGCGCAGCTTGAGAGCTTCGACGGCCACCTCGAGGCCATGgtaatgcggc ... atgcttgtagGTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGT
tataattgtattgtcgctgaattatgcatgacaatcagtaaacttatgcttgtagGTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGTGAGCAAAATCTGGAAGTTGCACCCTGA
taaacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgacaatgccatttgtttttcataatgcataattttaactgttgtataattgtattgtcgctgaattatgcatgacaatcagtaaacttatgcttgtagGTGTATACGGAATGGGAACTATGATGAAGCACTTGACCTAGAAGCTTTTGTGAGCAAAATCTGGAAGTTGCACCCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG