ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

gtttgtagttcttgttcacgctgcttcatgttcagtaacattgttctgttaatttaatcacatcacaaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG

Basic information

species	Zea mays
transcript	GRMZM2G006765_T02
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 3'ss of exon 2

-------------gtttgtagttcttgttcacgctg-----cttcatgttcagtaacattgttctgttaatttaatcacatcacaaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
              || |||||  || ||            |  |||||| |      ||  ||   || |||| |    |  | || | |||||||||||| |||||||| ||||||||||| |||||||||||||| || || || || ||||| |||||||| || ||||||||||| ||||||||||||||||
gttcgtggtgctcattcgtagtatttctttgtagcagttatccccatgtttatgtgatttaatcgtatactttacttttcttgcgaattgctggcagGCTGGGTTTGCTGGGGACGATGCGCCCAGGGCTGTTTTCCCTAGTATCGTGGGGCGCCCCCGTCACACCGGTGTGATGGTTGGTATGGGGCAGAAGGATG

upper sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 2

-------gtttgtagttcttgtt--cacgctgcttcatgttcagtaacattg-ttctgtta-------atttaatcacatcacaaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
        |||| ||||  |  |   | |     |    |  | ||   | | ||  ||||       ||||| |   || |  | ||     ||||| || ||||||||||| ||||| || |||||||| || || || |||||||| || || ||||| ||||| || |||||||| ||||| || |||||||
gttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTTGGCCGACCTCGTCATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2

gtttgtagttcttg----ttcacgctgcttcatgttcagtaaca----ttgttctgttaatttaatcacatcacaaactactgg-cagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
||| ||| ||| ||    ||     || | ||||| ||    ||    |||   |  ||| | ||| |  |     | ||  |  ||||| || ||||||||||||||||| || |||||||| || || || |||||||| || || || || ||||| || |||||||| ||||| || |||||||
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2

-----------------------------------------gtttgtagttcttgttcacgctgcttcatgttcagtaa-cattgttc-------tgttaatttaatcacatcacaaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
                                          ||         ||||||| ||| | | || | ||||  |||||||        | || || ||   |  |  |    |  | ||||||||||||||| ||||| ||||| || ||||| || ||||| |||||| ||||  | ||||| || ||||| || |||||||| ||||| ||||||||||
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctg-tgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG

upper sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1

-------------gtttgtagttcttgttcacgctgctt-catgttcagtaacattgttctgttaatttaatcacatcacaaactactgg-cagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
             |  | |  || |||||     |||||     |    || | |||   |  ||| | ||||         | ||  |  |||||||| ||||||||||| ||||| || |||||||| || || || |||||||| || || || |||||||| || |||||||| ||||| || |||||||
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 2

---gtttgtagttcttgttca--cgctgcttcatgttcagtaacattgttctgttaatttaa--tcac--atcacaaact------actggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
     ||  | |  || || |    |||  |  |  | |    | ||||| |     | |||    ||  ||||  |  |      | |  |||||||||||||||||||| ||||| || || || || |||||||| |||||||| || ||  | |||||||| || |||||||| ||||| ||||| ||||
gtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAAGATG

upper sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1

--------gtttgtagttcttgt--tcacgctgcttcatgttcagtaa----cattgttctgttaatttaatcacatca-------caaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
        | || |  ||  |||    | |    ||    |||||| |    | |||||   ||  |||   ||||| |         ||  |   ||||||||| ||||||||||| ||||| || |||||||| ||||| || |||||||| || || || ||||| || || |||||||| ||||| || |||||||
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG

upper sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 3

----------------------gtttgtagttcttg--ttcacgctgcttcatgttcagtaacattgtt-ctgttaatttaatcacatcacaaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
                       |  | ||   |||  |  |  ||  || ||| ||| |    | |   ||||   ||||||    |    || |    |||||||||||| ||||| |||||||| ||  | ||||||||||| ||||||||||| |||||  | |||||||| |||||||| || ||||| |||||||| |
ctcttttgcatctttatttataatgggcagacattggatgtagactaatttatgatcaatcctctcgaaactgt--gtttaattt--tggtgaattgaacgcagGCTGGTTTCGCTGGAGACGATGCTCCCCGCGCTGTTTTCCCCAGCATTGTTGGGCGCCCCAGGCACACTGGAGTGATGGTCGGTATGGGACAGAAGGACG

upper sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
lower sequence: PP1S337_26V6.1 (Physcomitrella patens), 3'ss of exon 2

-------------------gtttgtagt--tcttgttcacgctgcttca--tgttcagt--aacattgttctgttaatttaatcacatcacaaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
                   |||  |  |  |  | |||| |   |||||  ||| | ||  |  |     | ||   ||||||    |    || |    |||||||||||| ||||| |||||||| ||  | ||||||||||| ||||||||||| |||||  | |||||||| |||||||| || ||||| |||||||| |
caattcatgctataatggcgttcatgataatactattcaagtgacttcagttgtgctgtccagaacgaaaccgt--gtttaattg--tggtgaattgaacgcagGCTGGTTTCGCTGGAGACGATGCTCCCCGCGCTGTTTTCCCCAGCATTGTTGGGCGCCCCAGGCACACTGGAGTGATGGTCGGTATGGGACAGAAGGACG

upper sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
lower sequence: PP1S372_38V6.1 (Physcomitrella patens), 3'ss of exon 2

-----------------------------------------------------------------------------------------gtttg--tagttcttgttcacgctgcttcatgttcagtaacattgttctgttaattt--aatcacatcacaaactactggc--agGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
                                                                                         || ||   | |  | || |    | | |   | ||     |||  | |    ||| |  ||| |  ||         ||||  |||||||||| || || |||||||| ||  ||||||||||||| ||||| || || || ||  | ||||| || |||||||| |||||||| ||||| || |
gtatgcatgcttaccgcatatacgactgtaattctcccatgcaaatcgagcatgctaacaatcgcgccttgcatttgctaaggtacattgtctgatcaatcatagtactatatacatatcggtcctctgcataatgcgcaaaatctgaaattaggtctggtttatttggcgcagGCTGGTTTCGCCGGAGACGATGCCCCCCGGGCTGTTTTCCCCAGCATCGTGGGGCGGCCGAGGCACACCGGAGTGATGGTGGGCATGGGACAGAAAGACG

upper sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ17401 (Selaginella moellendorffii), 3'ss of exon 1

gtttgtagttcttgttcacgctgcttcatgttcagtaacattgttctgttaatttaatcacatcacaaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
                   || ||| |  |  | ||    || || ||  | ||| |||           | || ||||||||| ||||| || |||||||| || ||||| || || || |||||||| || || ||    ||||| ||||| |||||||| ||||||||||||||||
-----------------gtgc-gctcctggcgcggt----ttcttgtgg-attttgatccggggggtgtgttcttgcagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

upper sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 1

gtttgtagttcttgttcacgctgcttcatgttcagtaacattgttctgttaatttaatcacatcacaaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
                        | |       |    |||  |     | ||| |||           |  | ||||||||| ||||| || |||||||| || ||||| || || || |||||||| || || ||    ||||| ||||| |||||||| ||||||||||||||||
-----------------------gtgcgctcctggcgcgatttcttgtggattttgatccggggggtgtgtttttgcagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211179264|gb|FL010862.1|FL010862

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCTAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|32907965|gb|CF012778.1|CF012778

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|32868978|gb|CF008660.1|CF008660

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|211179259|gb|FL010857.1|FL010857

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|78117775|gb|DV536162.1|DV536162

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|71315363|gb|DR794285.1|DR794285

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|6695747|gb|AW288825.1|AW288825

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|211179261|gb|FL010859.1|FL010859

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|211179263|gb|FL010861.1|FL010861

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGKT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|211179260|gb|FL010858.1|FL010858

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|12045697|gb|BF727836.1|BF727836

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAATCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|101383600|gb|EB813855.1|EB813855

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|22546788|gb|BU099099.1|BU099099

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGGTTTCCCAAGCATTGGT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|32865168|gb|CF004850.1|CF004850

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|32906739|gb|CF011552.1|CF011552

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

EST: gi|78179272|gb|DV549645.1|DV549645

EST:     GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG                         GCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT
genomic: GCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 648

TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagtt ... ctactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 295

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 51

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1590

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

ttcatgttcagtaacattgttctgttaatttaatcacatcacaaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG

                   ttctgttaatttaat  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtagttcttgttcacgctgcttcatgttcagtaacattgttctgttaatttaatcacatcacaaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG