1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagcacttctccccgtagctatttgcacgccattattgagcttccggaaatcagggtgcaggaggaggtgtgcacagtgttctcatgttcatttgcgttcggaaatctgcagGTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACACAG
species | Zea mays |
transcript | GRMZM2G006714_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTC GTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGGACACEST: gi|71300570|gb|DR786336.1|DR786336
genomic: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTCgtaagcactt ... aaatctgcagGTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACAC
EST: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTC GTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACACEST: gi|71327838|gb|DR800549.1|DR800549
genomic: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTCgtaagcactt ... aaatctgcagGTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACAC
EST: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTC GTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACACEST: gi|148931931|gb|EC875155.2|EC875155
genomic: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTCgtaagcactt ... aaatctgcagGTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACAC
EST: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTC GTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACACEST: gi|149014237|gb|EE043797.2|EE043797
genomic: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTCgtaagcactt ... aaatctgcagGTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACAC
EST: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTC GTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACACEST: gi|148986918|gb|EE030728.2|EE030728
genomic: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTCgtaagcactt ... aaatctgcagGTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACAC
EST: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTC GTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACACEST: gi|148944745|gb|EC889886.2|EC889886
genomic: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTCgtaagcactt ... aaatctgcagGTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACAC
EST: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTC GTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACACEST: gi|87157821|gb|DY402610.1|DY402610
genomic: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTCgtaagcactt ... aaatctgcagGTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACAC
EST: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTC GTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGGACACEST: gi|22715528|gb|BU197812.1|BU197812
genomic: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTCgtaagcactt ... aaatctgcagGTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACAC
EST: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTC GTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGGACAC
genomic: AGTACATGCAGAGGCATCTGCCCAAGCTGGAGCCATTTCTGCGCAGAGTCgtaagcactt ... aaatctgcagGTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACAC
gcaggaggaggtgtgcacagtgttctcatgttcatttgcgttcggaaatctgcagGTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACACAG
ttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacttctccccgtagctatttgcacgccattattgagcttccggaaatcagggtgcaggaggaggtgtgcacagtgttctcatgttcatttgcgttcggaaatctgcagGTGCAGGAGGAGGTGCACAATGTTCTTATCCGACACATCGATTCCGCACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG