1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagatggcaccaactcaccgagtgatctttggcttcctttcaactgcaatgccgttgagtatctgggctaacctcgctgaaaagatgctaattctgggaactggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGTCACTGTGGCGTCGGTGGGAGATTCTAGGTGCATTCTGGATACACAGGG
species | Zea mays |
transcript | GRMZM2G006429_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|71314548|gb|DR793896.1|DR793896
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|19822432|gb|BQ048456.1|BQ048456
genomic: CGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: GACTTCCAGCGC-AGG GTGAGACGTCAGGAACGACGGCGACAC-TGTTG-GGTTGATGGGTTCACGGEST: gi|31354352|gb|CD438709.1|CD438709
genomic: GACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|76281727|gb|DV021295.1|DV021295
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|71331543|gb|DR802616.1|DR802616
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|50331894|gb|CO527020.1|CO527020
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|50332586|gb|CO527712.1|CO527712
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|71773439|gb|DR971341.1|DR971341
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|148995556|gb|EE034750.2|EE034750
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|89106849|gb|DY577066.1|DY577066
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|71428998|gb|DR810048.1|DR810048
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGGTCACGGEST: gi|71438441|gb|DR819491.1|DR819491
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|78123111|gb|DV541495.1|DV541495
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAAGATTCGTCAAGACAGATATTGACTTCCAGCGCAAGG GTGAGACGTCGGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|67032963|gb|CO461712.1|CO461712
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCATGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCATGAACGACGGCGACACTTGTTGTGGTTGATGCGTTCACGGEST: gi|211037782|gb|FL198987.1|FL198987
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACA-ACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAEST: gi|149079564|gb|EE168552.2|EE168552
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGA
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|94472234|gb|EB701192.1|EB701192
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|149045413|gb|EE047836.2|EE047836
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|101394557|gb|EB819213.1|EB819213
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|74233458|gb|DT641372.1|DT641372
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|71448151|gb|DR829201.1|DR829201
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|21843276|gb|BQ703857.1|BQ703857
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|149108127|gb|EE292476.2|EE292476
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|26455794|gb|CA827377.1|CA827377
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|211035344|gb|FL198979.1|FL198979
genomic: CGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGEST: gi|71323567|gb|DR798450.1|DR798450
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
EST: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGG GTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
genomic: CGCGCTCGTCGCAGGATTCGTCAAGACAGACATTGACTTCCAGCGCAAGGgtagatggca ... actggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGG
ttgagtatctgggctaacctcgctgaaaagatgctaattctgggaactggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGTCACTGTGGCGTCGGTGGGAGATTCTAGGTGCATTCTGGATACACAGGG
tgctaat putative branch site (score: 2)
aaaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagatggcaccaactcaccgagtgatctttggcttcctttcaactgcaatgccgttgagtatctgggctaacctcgctgaaaagatgctaattctgggaactggtgcagGTGAGACGTCAGGAACGACGGCGACACTTGTTGTGGTTGATGGGTTCACGGTCACTGTGGCGTCGGTGGGAGATTCTAGGTGCATTCTGGATACACAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT