Sequence
atgc intronic sequence ATGC exonic sequence...agtgcagatcattcatatgacattggaggttaatatcttgttctggctctgcagtttccataaaattctgagttttacagtgcaaactatgtctgatcagGTTATATTTGGACGACGACATGTTGGGATAATGTCAGCTGAATCAGTAGGAAACTACGGAGTCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G006277_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g10430.2 (Oryza sativa), 3'ss of exon 2
----agtgcagatcattcatatgacattggaggttaatatcttgttctggctctgcagtttccataaaattctgagttttacagtgcaaactatgtctgatcagGTTATATTTGGACGACGACATGTTGGGATAATGTCAGCTGAATCAGTAGGAAACTACGGAGTCCG-----------------------------------
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tctgtatctttaatattggcatcgcttcggtgccctagaaaat-ttcggtctactaagtttttacgg---tggaaattatgccaatctgcatttctttgatcagGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGTGAGGGTCATGTTTCTTGCATTATCAAATTCGTG
upper sequence: GRMZM2G006277_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g10430.1 (Oryza sativa), 3'ss of exon 2
----agtgcagatcattcatatgacattggaggttaatatcttgttctggctctgcagtttccataaaattctgagttttacagtgcaaactatgtctgatcagGTTATATTTGGACGACGACATGTTGGGATAATGTCAGCTGAATCAGTAGGAAACTACGGAGTCCG
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tctgtatctttaatattggcatcgcttcggtgccctagaaaat-ttcggtctactaagtttttacgg---tggaaattatgccaatctgcatttctttgatcagGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACG
upper sequence: GRMZM2G006277_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g67730.1 (Oryza sativa), 3'ss of exon 2
agtgcagatcattcatatgacattggaggttaatatcttgttctggctctgcagtttc-cataaaattctgagttttacagtgcaaactatgtctgatcagGTTATATTTGGACGACGACATGTTGGGATAATGTCAGCTGAATCAGTAGGAAACTACGGAGTCCG
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atagaaaagtactt-tctcaaagtcatgctttttattccgactttgctctctgctgtaacagaaaatgttataatgtatttactttgtaactcctgatcagGTTATATTTGGGCGACGGTATGTTGGAATAATGTCAGCTGAATCAGTAGGAAACTATGGAATTCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14244208|gb|BG842217.2|BG842217EST: TATACAGCCCAGCAGCTGATAGCAAAATCCGATCAGTGGGCGGTGAAAAG GTTATATTTGGACGACGACATGTTGGGATAATGTCAGCTGAATCAGTAGGA
genomic: TATACAGCCCAGCAGCTGATAGCAAAATCCGATCAGTGGGCGGTGAAAAGgtaatttctg ... gtctgatcagGTTATATTTGGACGACGACATGTTGGGATAATGTCAGCTGAATCAGTAGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctctgcagtttccataaaattctgagttttacagtgcaaactatgtctgatcagGTTATATTTGGACGACGACATGTTGGGATAATGTCAGCTGAATCAGTAGGAAACTACGGAGTCCG
ataaaattct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtgcagatcattcatatgacattggaggttaatatcttgttctggctctgcagtttccataaaattctgagttttacagtgcaaactatgtctgatcagGTTATATTTGGACGACGACATGTTGGGATAATGTCAGCTGAATCAGTAGGAAACTACGGAGTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- tgcagat
- - - - -cattcat
- - - - - - - - -tgacatt
- - - - - - - - - - - - - - - - - - - tgttctg
- - - - - - - - - - - - - - - - - - - - - - - -tctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagtgca