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...atcctcttgattctgttgtgaactaacgtggcaccatattatacttggtaaatgacaagtctaacttgatttttctctcatgtctgttgattctgttcagGTCTTGAAAGAGACACTAACTAGGCACGGCTTCACCTTTGAGTCTGATACAGACACAGAAGTCATCCCTAAGCTAGCAAAGTTCGTTTTTGATAAATCTC
species | Zea mays |
transcript | GRMZM2G005849_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGGTGATGAGTTCTTGGTTGTCCACAATGGCATTATCACCAACTATGAG GTCTTGAAAGAGACACTAACTAGGCACGGCTTCACCTTTGAGTCTGATACAEST: gi|149005284|gb|EE039833.2|EE039833
genomic: CCGGTGATGAGTTCTTGGTTGTCCACAATGGCATTATCACCAACTATGAGgtctgcttac ... ttctgttcagGTCTTGAAAGAGACACTAACTAGGCACGGCTTCACCTTTGAGTCTGATACA
EST: CCGGTGATGAGTTCTTGGTTGTTCACAATGGCATTATCACCAACTATGAG GTCTTGAAAGAGACACTAACTAGGEST: gi|89758439|gb|DY687617.1|DY687617
genomic: CCGGTGATGAGTTCTTGGTTGTCCACAATGGCATTATCACCAACTATGAGgtctgcttac ... ttctgttcagGTCTTGAAAGAGACACTAACTAGG
EST: CCGGTGATGAGTTCTTGGTTGTCCACAATGGCATTATCACCAACTATGAG GTCTTGAAAGAGACACTAACTAGGCACGGCTTCACCTTTGAGTCTGATACAEST: gi|149014772|gb|EE044464.2|EE044464
genomic: CCGGTGATGAGTTCTTGGTTGTCCACAATGGCATTATCACCAACTATGAGgtctgcttac ... ttctgttcagGTCTTGAAAGAGACACTAACTAGGCACGGCTTCACCTTTGAGTCTGATACA
EST: CCGGTGATGAGTTCTTGGTTGTCCACAATGGCATTATCACCAACTATGAG GTCTTGAAAGAGACACTAACTAGGCACGGCTTCACCTTTGAGTCTGATACAEST: gi|149081060|gb|EE170160.2|EE170160
genomic: CCGGTGATGAGTTCTTGGTTGTCCACAATGGCATTATCACCAACTATGAGgtctgcttac ... ttctgttcagGTCTTGAAAGAGACACTAACTAGGCACGGCTTCACCTTTGAGTCTGATACA
EST: CCGGTGATGAGTTCTTGGTTGTCCACAATGGCATTATCACCAACTATGAG GTCTTGAAAGAGACACTAACTAGGCACGGCTTCACCTTTGAGTCTGATACA
genomic: CCGGTGATGAGTTCTTGGTTGTCCACAATGGCATTATCACCAACTATGAGgtctgcttac ... ttctgttcagGTCTTGAAAGAGACACTAACTAGGCACGGCTTCACCTTTGAGTCTGATACA
tggtaaatgacaagtctaacttgatttttctctcatgtctgttgattctgttcagGTCTTGAAAGAGACACTAACTAGGCACGGCTTCACCTTTGAGTCTGATACAGACACAGAAGTCATCCCTAAGCTAGCAAAGTTCGTTTTTGATAAATCTC
ttctgttc CT-rich tract
ttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcctcttgattctgttgtgaactaacgtggcaccatattatacttggtaaatgacaagtctaacttgatttttctctcatgtctgttgattctgttcagGTCTTGAAAGAGACACTAACTAGGCACGGCTTCACCTTTGAGTCTGATACAGACACAGAAGTCATCCCTAAGCTAGCAAAGTTCGTTTTTGATAAATCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG