1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgaacaacaatcgcaattgtagcagcgtttatttggaggcacccctttaattctattctgttgtttgaaagttgaaactatggcttatgtatctgccagGGATGAACCAGGACGGATGCATTTACTGGAGATCACACTGCCCATGGGCTATCCCGAAAGTCCTCCTTCAATCTCTGCA
species | Zea mays |
transcript | GRMZM2G005365_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTGTGAGCGCCACAGGAGACGGAGTGTCCTGTCTCACCTTCCGCGTCGT GGATGAACCAGGACGGATGCATTTACTGGAGATCYACACTGCCCATGGGCTEST: gi|148995701|gb|EE034926.2|EE034926
genomic: CTGGTGAGCGCCACAGGAGACGGAGTGTCCTGTCTCACCTTCCGCGTCGTgtaaggattc ... tatctgccagGGATGAACCAGGACGGATGCATTTACTGGAGATC-ACACTGCCCATGGGCT
EST: CTGGTGAGCGCCACAGGAGACGGAGTGTCCTGTCTCACCTTCCGCGTCGT GGATGAACCAGGACGGATGCATTTACTGGAGATCACACTGCCCATGGGCTA
genomic: CTGGTGAGCGCCACAGGAGACGGAGTGTCCTGTCTCACCTTCCGCGTCGTgtaaggattc ... tatctgccagGGATGAACCAGGACGGATGCATTTACTGGAGATCACACTGCCCATGGGCTA
ctttaattctattctgttgtttgaaagttgaaactatggcttatgtatctgccagGGATGAACCAGGACGGATGCATTTACTGGAGATCACACTGCCCATGGGCTATCCCGAAAGTCCTCCTTCAATCTCTGCA
ctttaat putative branch site (score: 65)
attctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaacaacaatcgcaattgtagcagcgtttatttggaggcacccctttaattctattctgttgtttgaaagttgaaactatggcttatgtatctgccagGGATGAACCAGGACGGATGCATTTACTGGAGATCACACTGCCCATGGGCTATCCCGAAAGTCCTCCTTCAATCTCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA