1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aattctgggtccgccactgtgcatttgacatgctttgccttcactctggtgtctggtgctcgaatctgatattccattttttttgttctttggtgtatagTACGTGTCCGCCGTCTGTTTCCACTCACCGTGTGATACTGTGATGGTGGACTTGGACGAGCCGCTCGATGCGGCTGTAACTGCGGAGAAGGGCAAGGCGG
species | Zea mays |
transcript | GRMZM2G005308_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGCAATACTCTTTTCCTTCTTCAAATGTGTGAAAATATAGGCAGTCCGG TACGTGTCCGCCGTCTGTTTCCACTCACCGTGTGATACTGTGATGGTGGAC
genomic: TGGCAATACTCTTTTCCTTCTTCAAATGTGTGAAAATATAGGCAGTCCGGgtattgcttt ... tggtgtatagTACGTGTCCGCCGTCTGTTTCCACTCACCGTGTGATACTGTGATGGTGGAC
ctggtgtctggtgctcgaatctgatattccattttttttgttctttggtgtatagTACGTGTCCGCCGTCTGTTTCCACTCACCGTGTGATACTGTGATGGTGGACTTGGACGAGCCGCTCGATGCGGCTGTAACTGCGGAGAAGGGCAAGGCGG
atctgat putative branch site (score: 25)
tattccattttttttg CT-rich tract
atattccatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattctgggtccgccactgtgcatttgacatgctttgccttcactctggtgtctggtgctcgaatctgatattccattttttttgttctttggtgtatagTACGTGTCCGCCGTCTGTTTCCACTCACCGTGTGATACTGTGATGGTGGACTTGGACGAGCCGCTCGATGCGGCTGTAACTGCGGAGAAGGGCAAGGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- ttctggg
- - - - - ccgccac
- - - - - - - - - gtgcatt
- - - - - - - - - - - - - gacatgc
- - - - - - - - - - - - - - - - - - gccttca
- - - - - - - - - - - - - - - - - - - - - - tctggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - ctggtgc