1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcacatgcctgtttttttaataagtgccttctcctgataatattagcaagcaatgtgggtaaaattgctctctctttttttgctgatgatgttgctacagGAGGGGCTAGGAACTTTAAAGTGATGAAATCTTTCAGCCAGCAGGCAGGAATCCAAGGTGGACTGGGCGCAGCTTTTCCTTCTCATGCCACCTTCCCTCA
species | Zea mays |
transcript | GRMZM2G005236_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTGCTTCCCTTGGGGTTCAAAGATCTAGGCCTCCTACTCCCCAGCATG GAGGGGCTAGGAACTTTAAAGTGAYGAAATCTTTCAGCCAGCAGGCAGGAAEST: gi|9028690|gb|BE238730.1|BE238730
genomic: TCTTGCTTCCCTTGGGGTTCAAAGATCTAGGCCTCCTACTCCCCAGCATGgttagatatt ... gttgctacagGAGGGGCTAGGAACTTTAAAGTGATGAAATCTTTCAGCCAGCAGGCAGGAA
EST: TCTTGCTTCCCTTGGGGTTCAAAGATCTAGGCCTCCTACTCCCCAGCATG GAGGGGCTAGGAACTTTAAAGTGATGAAGTTTTTTAGCCAGCAGGCAGGAAEST: gi|8665700|gb|BE186516.1|BE186516
genomic: TCTTGCTTCCCTTGGGGTTCAAAGATCTAGGCCTCCTACTCCCCAGCATGgttagatatt ... gttgctacagGAGGGGCTAGGAACTTTAAAGTGATGAAATCTTTCAGCCAGCAGGCAGGAA
EST: TCTTGCTTCCCTTGGGGTTCAAAGATCTAGGCCTCCTACTCCCCAGCATG GAGGGGCTAGGAACTTTAAAGTGATGAAGTCTTTCAGCCAGCAGGCAGGAA
genomic: TCTTGCTTCCCTTGGGGTTCAAAGATCTAGGCCTCCTACTCCCCAGCATGgttagatatt ... gttgctacagGAGGGGCTAGGAACTTTAAAGTGATGAAATCTTTCAGCCAGCAGGCAGGAA
gcaagcaatgtgggtaaaattgctctctctttttttgctgatgatgttgctacagGAGGGGCTAGGAACTTTAAAGTGATGAAATCTTTCAGCCAGCAGGCAGGAATCCAAGGTGGACTGGGCGCAGCTTTTCCTTCTCATGCCACCTTCCCTCA
tgctgat putative branch site (score: 3)
tcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacatgcctgtttttttaataagtgccttctcctgataatattagcaagcaatgtgggtaaaattgctctctctttttttgctgatgatgttgctacagGAGGGGCTAGGAACTTTAAAGTGATGAAATCTTTCAGCCAGCAGGCAGGAATCCAAGGTGGACTGGGCGCAGCTTTTCCTTCTCATGCCACCTTCCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT