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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgccctgctctcacatatgttgaagttctggttttgttttgttttgtttccgttcttttccatgacatcaatgttttcttatggacttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAAACACCTGCTTCATCTGGAGTATCACATCTGTTGGAGAGAATGGCCTTCA

Basic information

species Zea mays
transcript GRMZM2G005036_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G005036_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g44916.1 (Oryza sativa), 3'ss of exon 2
gtactgccctgctctcacatatgttgaagttctggttttgttttgttttgtttccgttcttttccatgacatcaatgttttcttatggacttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAAACACCTGCTTCATCTGGAGTATCACATCTGTTGGAGAGAATGGCCTTCA
                  ||   || | | |      || | ||      |||  ||| ||||| |    || ||  |||||   ||     |  |||||  || || | ||| ||||| ||||||||||| ||||||||  |||| || ||| || |||||||||||  ||||||||| |||||||||||||||||||
----------------gtattgcttcatgcttc---cttatgttacaagatttttgtttttttc-acatgattaactttttccagtgactcaatttcagATTCCGGCTGTATCAGTGGGACTGTACATTGATTGTGGTTCTGTTTATGAGACATCTTCTTCATCTGGAACATCACATCTATTGGAGAGAATGGCCTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211371009|gb|FL375201.1|FL375201
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211360499|gb|FL383507.1|FL383507
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|149042117|gb|EE047095.2|EE047095
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|71764445|gb|DR962382.1|DR962382
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211403744|gb|FL425459.1|FL425459
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211474431|gb|FL414208.1|FL414208
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|88755467|gb|DY539608.1|DY539608
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|76935641|gb|DV174409.1|DV174409
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCATCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211328211|gb|FL409833.1|FL409833
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211340942|gb|FL378185.1|FL378185
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211273249|gb|FL384317.1|FL384317
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|31358559|gb|CD442916.1|CD442916
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|31354401|gb|CD438758.1|CD438758
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|31353102|gb|CD437459.1|CD437459
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211283949|gb|FL372048.1|FL372048
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211149279|gb|FL424930.1|FL424930
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211411533|gb|FL428561.1|FL428561
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|76912595|gb|DV164810.1|DV164810
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|78092878|gb|DV521252.1|DV521252
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|31354663|gb|CD439020.1|CD439020
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211451674|gb|FL376119.1|FL376119
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|148965824|gb|EE016713.2|EE016713
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|148944905|gb|EC890064.2|EC890064
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|89247626|gb|DY619412.1|DY619412
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211381649|gb|FL369275.1|FL369275
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|31910625|gb|CD651518.1|CD651518
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|38687651|gb|CK144682.1|CK144682
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|5555303|gb|AI881254.1|AI881254
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211300764|gb|FL380982.1|FL380982
EST:     AAGTCAVTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|37421502|gb|CF648451.1|CF648451
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|78106581|gb|DV524999.1|DV524999
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|19822381|gb|BQ048405.1|BQ048405
EST:     TCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: TCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|149081535|gb|EE170671.2|EE170671
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211164240|gb|FL370536.1|FL370536
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|31349354|gb|CD433711.1|CD433711
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211159959|gb|FL410900.1|FL410900
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
EST: gi|211428589|gb|FL379172.1|FL379172
EST:     AAGTCACTACTCTTCCAAATGGCGTCAAGATCGTCTCGGAGACATCATCG                         AGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA
genomic: AAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 267

CATTAGCATTCCCTCACCTCTACCAGATTTTGTAGAGCCATCTAAGACAAAAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAAACACCTGCTTCATCTGGAGTATCACATCTGTTGGAGAGAATGGCCTTCA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 259

CATTAGCATTCCCTCACCTCTACCAGATTTTGTAGAGCCATCTAAGACAAAAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAAACACCTGCTTCATCTGGAGTATCACATCTGTTGGAGAGAATGGCCTTCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 243

CATTAGCATTCCCTCACCTCTACCAGATTTTGTAGAGCCATCTAAGACAAAAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAAACACCTGCTTCATCTGGAGTATCACATCTGTTGGAGAGAATGGCCTTCA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 251

CATTAGCATTCCCTCACCTCTACCAGATTTTGTAGAGCCATCTAAGACAAAAGTCACTACTCTTCCAAATGGCGTCAAGATCGCCTCGGAGACATCATCGgtactgccct ... cttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAAACACCTGCTTCATCTGGAGTATCACATCTGTTGGAGAGAATGGCCTTCA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttgtttccgttcttttccatgacatcaatgttttcttatggacttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAAACACCTGCTTCATCTGGAGTATCACATCTGTTGGAGAGAATGGCCTTCA
                                            acttaac  putative branch site (score: 251)
                                 ttttcttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactgccctgctctcacatatgttgaagttctggttttgttttgttttgtttccgttcttttccatgacatcaatgttttcttatggacttaactcagAGCCCAGCAGCATCTGTGGGTCTGTACATTGACTGTGGTTCCATTTACGAAACACCTGCTTCATCTGGAGTATCACATCTGTTGGAGAGAATGGCCTTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA