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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtactgactagtgactactgactgacatcacccaccggccgaacaccatcacctgcttgcaatgcaatgcaagcatattcagggtgtgctgctgatggactggagcacgcgcgcatgcattgcagACGCAGCAGGAACGGCACGAGAACATGCAGCTGCGGGCGGAGAACGAGAAGCTGCGCGCCGAGAACGCGCGGTACAAGGACGCGCTCGCCAACGCCTCGT

Basic information

species Zea mays
transcript GRMZM2G004957_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004957_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g04190.1 (Oryza sativa), 3'ss of exon 1
gtactgtactgactagtgactactgactgacatcacccaccggccgaacaccatcacctgcttgcaatgcaatgcaagcatattcagggtgtgctgctgatggactggagcacgcgcgcatgcattgcagACGCAGCAGGAACGGCACGAGAACATGCAGCTGCGGGCGGAGAACGAGAAGCTGCGCGCCGAGAACGCGCGGTACAAGGACGCGCTCGCCAACGCCTCGT
||| | |||| |   |||  | |   |  | |||   |||     |   ||   || | | |   ||||   ||     | ||       ||       |||    |  ||||| |    |   |||||||||||||| ||  | ||||||||||    |||||| || ||||||||||||||||| || ||||||  | |||||||||| ||||| |||||||| || |
gtaatatactaatccgtgcat-ccatcgtatatcttacacgtcatgtgaacgtgcatcggttcataatgttgtgtttataaatgttaatggt-------atgtgtggttgcacgggtttgtatgttgcagACGCAGCATGAGAGACACGAGAACAATGCGCTGCGCGCAGAGAACGAGAAGCTGCGGGCAGAGAACATGAGGTACAAGGAGGCGCTTGCCAACGCGTCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcatattcagggtgtgctgctgatggactggagcacgcgcgcatgcattgcagACGCAGCAGGAACGGCACGAGAACATGCAGCTGCGGGCGGAGAACGAGAAGCTGCGCGCCGAGAACGCGCGGTACAAGGACGCGCTCGCCAACGCCTCGT
                   tgctgat  putative branch site (score: 3)