1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatgtgctaattttatttttgtatcctcatacttatggttgatcatgttttagtacctgtttgagccatggtatttgctaattttctttttgtattgcagTGGAGTTTTCACCCTTTTGTTTATCACAGCAAACGCTTTTACACTGTTCTACTATGGCGTAGGGTGCTGGCATTTCTAGTG
species | Zea mays |
transcript | GRMZM2G004949_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTATCTTAGTGAGAGCTTATTCACTTTCATCTTCATTTCCTTTTTTCTG TGGAGTTTTCACCCTTTTGTTTATCACAGCAAACGCTTTTACACTGTTCTAEST: gi|60399831|gb|DN232641.1|DN232641
genomic: GTTATCTTAGTGAGAGCTTATTCACTTTCATCTTCATTTCCTTTTTTCTGgtaggtgacc ... tgtattgcagTGGAGTTTTCACCCTTTTGTTTATCACAGCAAACGCTTTTACACTGTTCTA
EST: GTTATCTTAGTGAGAGCTTATTCACTTTCATCTTCATTTCCTTTTTTCTG TGGAGTTTTCACCCTTTTGTTTATCACAGCAAACGCTTTTACACTGTTCTA
genomic: GTTATCTTAGTGAGAGCTTATTCACTTTCATCTTCATTTCCTTTTTTCTGgtaggtgacc ... tgtattgcagTGGAGTTTTCACCCTTTTGTTTATCACAGCAAACGCTTTTACACTGTTCTA
tgttttagtacctgtttgagccatggtatttgctaattttctttttgtattgcagTGGAGTTTTCACCCTTTTGTTTATCACAGCAAACGCTTTTACACTGTTCTACTATGGCGTAGGGTGCTGGCATTTCTAGTG
tgctaat putative branch site (score: 95)
ttttctttttgtatt CT-rich tract
taattttctttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtgctaattttatttttgtatcctcatacttatggttgatcatgttttagtacctgtttgagccatggtatttgctaattttctttttgtattgcagTGGAGTTTTCACCCTTTTGTTTATCACAGCAAACGCTTTTACACTGTTCTACTATGGCGTAGGGTGCTGGCATTTCTAGTG
- tgtgcta
- - - - - - - - - -tgtatcc
- - - - - - - - - - - - - - - - - atggttg
- - - - - - - - - - - - - - - - - - - - - -catgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctaa