1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcgcgcgtatcctacactacactttaattccggcctccactccagcccacggcaacggcactaactaatctgaggatctatctccccgccgctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCG
species | Zea mays |
transcript | GRMZM2G004699_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGEST: gi|9255437|gb|BE345905.1|BE345905
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGG
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGEST: gi|22546122|gb|BU098443.1|BU098443
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGG
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGGGGTTCAAGAACACGAGCGCCGAEST: gi|22819448|gb|BU499538.1|BU499538
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGA
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGAEST: gi|89761345|gb|DY689393.1|DY689393
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGA
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGAEST: gi|29130857|gb|CB381561.1|CB381561
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGA
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCEST: gi|23357642|gb|BU645291.1|BU645291
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGC
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTEST: gi|50326237|gb|CO521363.1|CO521363
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGT
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGGTGTEST: gi|211298984|gb|FL169196.1|FL169196
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGT
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCEST: gi|26456139|gb|CA827722.1|CA827722
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGC
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGAEST: gi|60343742|gb|DN210715.1|DN210715
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGA
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGEST: gi|211298980|gb|FL169192.1|FL169192
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCG
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGTACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGGATCCCGGTGGTCAAGAACACGAGCGCCGEST: gi|22546396|gb|BU098707.1|BU098707
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCG-ATCCGGGTGTTCAAGAACACGAGCGCCG
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGAEST: gi|76018116|gb|DT945286.1|DT945286
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGA
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGAEST: gi|50329318|gb|CO524444.1|CO524444
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGA
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGAEST: gi|148960072|gb|EE153316.2|EE153316
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCGA
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACGTGCCGATCCGGGTGTTTCA-GAACACGAGCGCCGEST: gi|211296836|gb|FL169175.1|FL169175
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTT-CAAGAACACGAGCGCCG
EST: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGC GTTCTTCGTGGACGACG
genomic: ACCAAGGAGTACCACTCCTACTCCGTCCTCTGGAACCTCTACATGATCGCgtaagcaccc ... gctccgccagGTTCTTCGTGGACGACG
cccacggcaacggcactaactaatctgaggatctatctccccgccgctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCG
tctccccgccgctcc CT-rich tract
taactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgcgcgtatcctacactacactttaattccggcctccactccagcccacggcaacggcactaactaatctgaggatctatctccccgccgctccgccagGTTCTTCGTGGACGACGTGCCGATCCGGGTGTTCAAGAACACGAGCGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC