Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcttaatttgtcccgtattgctacccattcatgcggacgagtattctcgttcatctttttcccattccatggccttaatcgaaacctgaatctgttggtggttgtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGGCTCCCTCACCCAGGCTTCCACCATCAGAGTAGGCAGCTACAACGGGGAG

Basic information

species Zea mays
transcript GRMZM2G004528_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 2
gtaagtgcttaatttgtcccgtattgctacccattcatgcggacgagtattctcgttcatctttttcccattccatggccttaatcgaaacctgaatctgttggtggttgtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGGCTCCCTCACCCAGGCTTCCACCATCAGAGTAGGCAGCTACAACGGGGAG
||||||| | |      | |    | ||||   |         | ||        ||||||| |||    ||   ||   ||||  ||          || |||||   ||    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || || |||||||||||||||
gtaagtgatca------ctcacgct-ctacttttctgcctaagctagc-------ttcatctgttttttcttttctgaatttaactga----------tgatggtgtgagtttaatcagGGGAATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTATGGCTCACTCACCCAGGCGTCCACCATCAGGGTCGGGAGCTACAACGGGGAG

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA18G02210.2 (Glycine max), 3'ss of exon 2
gtaagtgcttaatttgtcccgtattgctacccattcatgcggacgagtattctcgttcatctttttcccattccatggccttaatcgaaacctgaatctgttggtggttgtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGGCTCCCTCACCCAGGCTTCCACCATCAGAGTAGGCAGCTACAACGGGGAG
                       ||  |  | |||  |  |     || || | ||     |       |     ||   || ||  |    | | | |  |  |   ||   | ||||||| || |||||||| || ||||||||| | || |||||||| ||||  |||||||||||||| || ||  | ||  |||| ||   || | | || |||
----------------------gttagtttcgatttcttagcctctgtcttttggtattattaagaggaaccttgtgttatttatttatgggtcatttttgtattttatgatttctcagGGGCATTTCATGGGCTACAAAGGACAAGATTCAACAAGCCAATTACTTTGGCTCCCTCACCCAAGCCTCAGCTATTCGAGTTGGATCCTTCCAGGGAGAG

upper sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 2
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtg-cttaatt--tgtcccgtattgctacccattcatgcggacga-----------gtattctcgttcatctttttcccattccatggccttaatcgaaacctgaatctgttggtggt-tgtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGGCTCCCTCACCCAGGCTTCCACCATCAGAGTAGGCAGCTACAACGGGGAG
|| |||  |||  ||  || || |  ||||| |  | |  |    |  |           || |  | | | |  ||| |    ||   |    | | |   ||  |  |   || |||  |   |  | ||||||| || |||||||| ||||||||||||||||| | |||||| ||||  ||||| || || ||||| || |||||| |||| ||   |||||| || |||
gtgagtttcttcgttcttgccctgctttgctccatacttgtttaaaaaaaaaaaaaaactgtttggttggtgagatttgttgatttttttaaaatgatttttaattttgagaagtgggtcatgcattttatcagGGGAATTTCATGGGCAACCAAGGACAAGGTGCAACCAGCCAATTACTTTGGCTCGCTGACTCAGGCATCGACCATCCGAGTTGGGTCCTACAATGGAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211175604|gb|FL003466.1|FL003466
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211359834|gb|FL003521.1|FL003521
EST:     GGAGGCAACAACGGGTCCACGCTTACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|148946953|gb|EC892243.2|EC892243
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211357175|gb|FL003508.1|FL003508
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211359830|gb|FL003517.1|FL003517
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|148936903|gb|EC881052.2|EC881052
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211173928|gb|FL003454.1|FL003454
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211177294|gb|FL003490.1|FL003490
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211173935|gb|FL003461.1|FL003461
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGNCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|148953799|gb|EC899172.2|EC899172
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211357174|gb|FL003507.1|FL003507
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAAGGTGCAGCAAGCCAACTACTACG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAA-GGTGCAGCAAGCCAACTACTACG
EST: gi|211359828|gb|FL003515.1|FL003515
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211173932|gb|FL003458.1|FL003458
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCA-CAGGGA                         GGGGATCTCATGGGCGACCANGGACNAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211357168|gb|FL003501.1|FL003501
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTAC
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTAC
EST: gi|31353868|gb|CD438225.1|CD438225
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211175610|gb|FL003472.1|FL003472
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|32851119|gb|CD990800.1|CD990800
EST:     GGGTCCACGCTGACGGCGGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|76021574|gb|DT948744.1|DT948744
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|149101031|gb|EE187129.2|EE187129
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|149073392|gb|EE161696.2|EE161696
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211175603|gb|FL003465.1|FL003465
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211357163|gb|FL003496.1|FL003496
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|149087787|gb|EE177103.2|EE177103
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|33098126|gb|CF058086.1|CF058086
EST:     CACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: CACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|76281435|gb|DV021003.1|DV021003
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211362497|gb|FL003537.1|FL003537
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGC-AACAGGGA                         GGGGATCTCATGGGCGACAAAG-ACAAGGTGCAGCAAGC
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGC
EST: gi|22521258|gb|BU080069.1|BU080069
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|50322698|gb|CO517824.1|CO517824
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211359822|gb|FL003509.1|FL003509
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211359825|gb|FL003512.1|FL003512
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211177289|gb|FL003485.1|FL003485
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAG
EST: gi|211359827|gb|FL003514.1|FL003514
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211172253|gb|FL003442.1|FL003442
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211172252|gb|FL003441.1|FL003441
EST:     GAGGCAACAACGGGTCCACGCTGACGGCTGGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGGACA-GGTGCAGCAAGCCAACTACTACG
genomic: GAGGCAACAACGGGTCCACGCTGACGGCTGGGG-TCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGG-ACAAGGTGCAGCAAGCCAACTACTACG
EST: gi|211362494|gb|FL003534.1|FL003534
EST:     GAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCA
genomic: GAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGG-Agtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCA
EST: gi|211173933|gb|FL003459.1|FL003459
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211362485|gb|FL003525.1|FL003525
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|148930728|gb|EC873009.2|EC873009
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211172257|gb|FL003446.1|FL003446
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|149071428|gb|EE159822.2|EE159822
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211172255|gb|FL003444.1|FL003444
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAA
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAA
EST: gi|148941673|gb|EC886620.2|EC886620
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211362487|gb|FL003527.1|FL003527
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|74245840|gb|DT653754.1|DT653754
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211175613|gb|FL003475.1|FL003475
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211359831|gb|FL003518.1|FL003518
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|6564126|gb|AW231748.1|AW231748
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211173926|gb|FL003452.1|FL003452
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCC
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCC
EST: gi|211362495|gb|FL003535.1|FL003535
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|71434804|gb|DR815854.1|DR815854
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|71771142|gb|DR969079.1|DR969079
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211362491|gb|FL003531.1|FL003531
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211175611|gb|FL003473.1|FL003473
EST:     GGAGTCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAA
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAA
EST: gi|148952106|gb|EC897898.2|EC897898
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211173934|gb|FL003460.1|FL003460
EST:     GAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACG
genomic: GAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGG-Agtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACG
EST: gi|148936773|gb|EC880909.2|EC880909
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211177295|gb|FL003491.1|FL003491
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGC-AACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGC
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGC
EST: gi|71321477|gb|DR797439.1|DR797439
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAGGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211177286|gb|FL003482.1|FL003482
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211175602|gb|FL003464.1|FL003464
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211175614|gb|FL003476.1|FL003476
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAACAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|149013856|gb|EE043338.2|EE043338
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211177287|gb|FL003483.1|FL003483
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211362489|gb|FL003529.1|FL003529
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAA
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAA
EST: gi|149079979|gb|EE168997.2|EE168997
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211177292|gb|FL003488.1|FL003488
EST:     GGAGGCAACAACGGGTCCACGCTTACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGG
EST: gi|211357169|gb|FL003502.1|FL003502
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
EST: gi|211173931|gb|FL003457.1|FL003457
EST:     GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA                         GGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG
genomic: GGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGAgtaagtgctt ... gtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccattccatggccttaatcgaaacctgaatctgttggtggttgtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGGCTCCCTCACCCAGGCTTCCACCATCAGAGTAGGCAGCTACAACGGGGAG
              ccttaat  putative branch site (score: 4)
                                              tcgtttc  putative PPT
                ttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgcttaatttgtcccgtattgctacccattcatgcggacgagtattctcgttcatctttttcccattccatggccttaatcgaaacctgaatctgttggtggttgtcgtttcagGGGGATCTCATGGGCGACCAAGGACAAGGTGCAGCAAGCCAACTACTACGGCTCCCTCACCCAGGCTTCCACCATCAGAGTAGGCAGCTACAACGGGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT