1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtcagctggaaagcatattttacagtcacactttcagttgcaatagattcttggttttgcttccccttggttttcctttcttactttccaaatgtgacagGAGATGAAACATTGCGGGGGCTCTCAATAAAAGCAGCTCAAAGGGCACTTGAAATGGCCAAAGTAAAAGCTGAAGATGTTGACCTTGTTCTCCTTTGTAC
species | Zea mays |
transcript | GRMZM2G003190_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAATGGATTGCAGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGGCTCTCAATAAAAGCAGCTCAAAGGGCACTTGEST: gi|211253555|gb|FL133110.1|FL133110
genomic: TGAATGGATTGCAGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaattatgt ... aatgtgacagGAGATGAAACATTGCGGGGGCTCTCAATAAAAGCAGCTCAAAGGGCACTTG
EST: TGAATGGATTGCAGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAG GAGATGAAACATTGCGGGGGCTCTCAATAAAAGCAGCTCAAA
genomic: TGAATGGATTGCAGCTCGAACTGGGATTCGTAACAGGCGAGTTCTTTCAGgtaattatgt ... aatgtgacagGAGATGAAACATTGCGGGGGCTCTCAATAAAAGCAGCTCAAA
gattcttggttttgcttccccttggttttcctttcttactttccaaatgtgacagGAGATGAAACATTGCGGGGGCTCTCAATAAAAGCAGCTCAAAGGGCACTTGAAATGGCCAAAGTAAAAGCTGAAGATGTTGACCTTGTTCTCCTTTGTAC
ttcttac putative branch site (score: 67)
ttttcctttcttactt CT-rich tract
tttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagctggaaagcatattttacagtcacactttcagttgcaatagattcttggttttgcttccccttggttttcctttcttactttccaaatgtgacagGAGATGAAACATTGCGGGGGCTCTCAATAAAAGCAGCTCAAAGGGCACTTGAAATGGCCAAAGTAAAAGCTGAAGATGTTGACCTTGTTCTCCTTTGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
-tcagctg
- - - - - - - - - - - - - - - - - cagttgc