1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagccagcatttgtgccgcttgcaatacttagcttctgctaggtgtttaatttggtggactgatcgatgtgaatgctctattcctgctcgcagTGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAG
species | Zea mays |
transcript | GRMZM2G003076_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG TGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGEST: gi|149112231|gb|EE295139.2|EE295139
genomic: ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagc ... ctgctcgcagTGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG
EST: ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG TGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGEST: gi|149081139|gb|EE170248.2|EE170248
genomic: ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagc ... ctgctcgcagTGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG
EST: ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG TGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGEST: gi|149109085|gb|EE189999.2|EE189999
genomic: ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagc ... ctgctcgcagTGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG
EST: ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG TGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG
genomic: ATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCGgtgagccagc ... ctgctcgcagTGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTG
ctaggtgtttaatttggtggactgatcgatgtgaatgctctattcctgctcgcagTGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAG
gactgat putative branch site (score: 3)
ctctattcctgctc putative PPT
tgtttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagccagcatttgtgccgcttgcaatacttagcttctgctaggtgtttaatttggtggactgatcgatgtgaatgctctattcctgctcgcagTGCGGTCTGTCGTGTTTGTGCTGCGGCGAAATGTGCAACTTGTAGAGCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC