Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatttcgggattcctgatgttcaaatgaaactgaactcgttctctatcgcagtctgctctaattgccatggcacacgagcaacattttataagatcttcgatttgtggtgttgctgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAATGTTGCACTGACACTGAGATACGAGATCAACAGGGGCTTTGCTACCTTG

Basic information

species Zea mays
transcript GRMZM2G002786_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G002786_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g53520.2 (Oryza sativa), 3'ss of exon 2
gtgagatttcgggattcctgatgttcaaatgaaactgaactcgttctctatcgcagtctgctctaattgccatggcacacgagcaacattttataagatcttcgatttgtggtgttgctgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAATGTTGCACTGACACTGAGATACGAGATCAACAGGGGCTTTGCTACCTTG
||||| ||  |   | | |    |   |       |  || ||       |    ||     |   ||| || |     |     |   | |||  |  | |  | || |  |  || |  |||| |||||||| ||||||||||||||||||||||| || |||||  || | || ||  |||| ||  | |||||||| |||||||| || || ||||| ||||||
gtgagcttctgtagtactttgactctgatgcgctttagacccgcagctggtatttgtggtgccctgttgtcaagtttttcc--ttatcatgtatgtggccat-aacttattatactgat--tttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAACATTGCCCTTTCTCTGAGATATGAGATCAATAGAGGTTTTGCAACCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78074111|gb|DV502545.1|DV502545
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|211478243|gb|FL012837.1|FL012837
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGT
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGT
EST: gi|28909442|gb|CB331814.1|CB331814
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|32806376|gb|CD958610.1|CD958610
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTA
EST: gi|32848367|gb|CD988048.1|CD988048
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|94477185|gb|EB706143.1|EB706143
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|74244054|gb|DT651968.1|DT651968
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|4753433|gb|AI657343.1|AI657343
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTG
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTG
EST: gi|148928699|gb|EC873319.2|EC873319
EST:     CATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: CATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|86469370|gb|DY235740.1|DY235740
EST:     CGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: CGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|94480310|gb|EB709268.1|EB709268
EST:     GCTGGCCATCCTGTTCCTGTGGTCCCAACGCCCTCCAGTTTCATCAACAA                         GTCCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTA
genomic: GCTGGCCATCCTGTTCCTGTGGTCC-AACGCC-TCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCC-ACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTA
EST: gi|211478239|gb|FL012833.1|FL012833
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|111190365|gb|EE288501.1|EE288501
EST:     GCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: GCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|211333645|gb|FL012812.1|FL012812
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTTCCCACCAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAA
EST: gi|148997316|gb|EE035811.2|EE035811
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|211478242|gb|FL012836.1|FL012836
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCC-ACCAAACATTCCTGAGGTGAAAAT
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAAT
EST: gi|83279394|gb|DV943402.1|DV943402
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|78088623|gb|DV517016.1|DV517016
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|88757596|gb|DY541737.1|DY541737
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|211333641|gb|FL012808.1|FL012808
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGA
EST: gi|211478246|gb|FL012840.1|FL012840
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGGTCTGTTA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTG-TCTGTTA
EST: gi|148982478|gb|EE028331.2|EE028331
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|33103505|gb|CF063465.1|CF063465
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTG
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTG
EST: gi|15208958|gb|BI430842.1|BI430842
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|211478241|gb|FL012835.1|FL012835
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCCYGTKA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCT-GTTA
EST: gi|148958637|gb|EC904892.2|EC904892
EST:     GCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: GCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|149072488|gb|EE160766.2|EE160766
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|28909435|gb|CB331812.1|CB331812
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|149103132|gb|EE288502.2|EE288502
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|60350462|gb|DN217435.1|DN217435
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|211335807|gb|FL012819.1|FL012819
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATTCCCTGA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAAT-CCCTGA
EST: gi|78088622|gb|DV517015.1|DV517015
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|211335817|gb|FL012829.1|FL012829
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAA
EST: gi|32806828|gb|CD959062.1|CD959062
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTA
EST: gi|211335805|gb|FL012817.1|FL012817
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCCTGTCA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTC-TGTTA
EST: gi|148946603|gb|EC891862.2|EC891862
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|89764135|gb|DY691052.1|DY691052
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|33103770|gb|CF063730.1|CF063730
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|148958638|gb|EC904893.2|EC904893
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|149017012|gb|EE045663.2|EE045663
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|110218442|gb|EC900340.1|EC900340
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|113703563|gb|EE681067.1|EE681067
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|60397846|gb|DN230662.1|DN230662
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|148965585|gb|EE016418.2|EE016418
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|91052894|gb|EB163312.1|EB163312
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|32830319|gb|CD969997.1|CD969997
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|40334051|gb|CK368121.1|CK368121
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|211478240|gb|FL012834.1|FL012834
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAA-TCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|76013338|gb|DT940508.1|DT940508
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|211333639|gb|FL012806.1|FL012806
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGT-AA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|148954864|gb|EC900341.2|EC900341
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|86468402|gb|DY234772.1|DY234772
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|76285736|gb|DV025304.1|DV025304
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|78078652|gb|DV507064.1|DV507064
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|78074112|gb|DV502546.1|DV502546
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|211478245|gb|FL012839.1|FL012839
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|32807803|gb|CD960037.1|CD960037
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTTCCTGAGGGTGAAAATCCC
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATT-CCTGAGG-TGAAAATCCC
EST: gi|211335811|gb|FL012823.1|FL012823
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCSAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCC
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCC
EST: gi|78078655|gb|DV507067.1|DV507067
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|33102912|gb|CF062872.1|CF062872
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
EST: gi|148930882|gb|EC873320.2|EC873320
EST:     TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAA                         GTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA
genomic: TCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 353

AGGTTATGGAGTACCATCTCCTCACCTTGGTGTGCCACTGTCTCATCGTCTCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAATGTTGCACTGACACTGAGATACGAGATCAACAGGGGCTTTGCTACCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 319

AGGTTATGGAGTACCATCTCCTCACCTTGGTGTGCCACTGTCTCATCGTCTCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAATGTTGCACTGACACTGAGATACGAGATCAACAGGGGCTTTGCTACCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 392

AGGTTATGGAGTACCATCTCCTCACCTTGGTGTGCCACTGTCTCATCGTCTCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAATGTTGCACTGACACTGAGATACGAGATCAACAGGGGCTTTGCTACCTTG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 288

AGGTTATGGAGTACCATCTCCTCACCTTGGTGTGCCACTGTCTCATCGTCTCGCTGGCCATCCTGTTCCTGTGGTCCAACGCCTCCAGTTTCATCAACAAgtgagatttc ... tgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAATGTTGCACTGACACTGAGATACGAGATCAACAGGGGCTTTGCTACCTTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcacacgagcaacattttataagatcttcgatttgtggtgttgctgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAATGTTGCACTGACACTGAGATACGAGATCAACAGGGGCTTTGCTACCTTG
                                          tgctgat  putative branch site (score: 288)
                                                ttttc  CT-rich tract
           aacattttataagat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagatttcgggattcctgatgttcaaatgaaactgaactcgttctctatcgcagtctgctctaattgccatggcacacgagcaacattttataagatcttcgatttgtggtgttgctgattttcagGTCCCCACCAAACATTCCTGAGGTGAAAATCCCTGAGGATGTGTCTGTTAATGTTGCACTGACACTGAGATACGAGATCAACAGGGGCTTTGCTACCTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA