1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atctacacaacactcaagttttgtttgataacttgcacgtcgctttcttagttctggtcttgtaagtgatgtttcattaactatcagaatctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGATGAGAAGTACTTGTGGAAAAACTTGACTATTCAGGAAAGTAAAAGGCTT
species | Zea mays |
transcript | GRMZM2G002687_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGAEST: gi|148959767|gb|EC905658.2|EC905658
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGAEST: gi|67037924|gb|CO464466.1|CO464466
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGAEST: gi|149010069|gb|EE041876.2|EE041876
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGAEST: gi|71305908|gb|DR789081.1|DR789081
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGAEST: gi|148935574|gb|EC879617.2|EC879617
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGAEST: gi|211230962|gb|FL341122.1|FL341122
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTKACTGACGAEST: gi|149105517|gb|EE291042.2|EE291042
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGAEST: gi|9953035|gb|BE639618.1|BE639618
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGAEST: gi|91049846|gb|EB160264.1|EB160264
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGAEST: gi|149073834|gb|EE162156.2|EE162156
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGAEST: gi|67014073|gb|CO442822.1|CO442822
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGAEST: gi|148973279|gb|EE024361.2|EE024361
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
EST: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAA ATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
genomic: TCGTCGGAGGCCCTGCACCTCGGCCACCTCATCCCCTTCATGTTCACAAAgtaagtagta ... ctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGA
tcttagttctggtcttgtaagtgatgtttcattaactatcagaatctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGATGAGAAGTACTTGTGGAAAAACTTGACTATTCAGGAAAGTAAAAGGCTT
cattaac putative branch site (score: 131)
tctttcttc putative PPT
tttcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctacacaacactcaagttttgtttgataacttgcacgtcgctttcttagttctggtcttgtaagtgatgtttcattaactatcagaatctttcttcagATACTTGCAGGAGGCTTTTAAGGTGCCCCTAGTTATACAACTGACTGACGATGAGAAGTACTTGTGGAAAAACTTGACTATTCAGGAAAGTAAAAGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - -cacaaca
- - - - - - - - - - ttgtttg
- - - - - - - - - - - - - - - -cttgcac
- - - - - - - - - - - - - - - - - - - - - - - - - -ttctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtt