1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcacttgattctatatccaagtctaacaggaagaggacagctaaacgaactgcattttctgattcagATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTGAGAAAGACGAATCATTGAAGTCTAAAGATGAAGAGTTTAAAGATATGAA
species | Zea mays |
transcript | GRMZM2G002440_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGTGAAGCCAATAATGTGCCTGGAACCGAGAAGGCACAGGAAGCAG ATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTGEST: gi|211356792|gb|FL332225.1|FL332225
genomic: TTCAAGTGAAGCCAATAATGTGCCTGGAACCGAGAAGGCACAGGAAGCAGgttcacttga ... tctgattcagATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTG
EST: TTCAAGTGAAGCCAATAATGTGCCTGGAACCGAGAAGGCACAGGAAGCAG ATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTEST: gi|50332491|gb|CO527617.1|CO527617
genomic: TTCAAGTGAAGCCAATAATGTGCCTGGAACCGAGAAGGCACAGGAAGCAGgttcacttga ... tctgattcagATTCAGAAGACCTAGACCTATCAAAGGAGGACCTT
EST: TTCAAGTGAAGCCAATAATGTGCCTGGAACCGAGAAGGCACAGGAAGCAG ATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTGEST: gi|37394200|gb|CF634371.1|CF634371
genomic: TTCAAGTGAAGCCAATAATGTGCCTGGAACCGAGAAGGCACAGGAAGCAGgttcacttga ... tctgattcagATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTG
EST: GAGAAGGCACAGGAAGCAG ATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTGEST: gi|211536909|gb|FL308322.1|FL308322
genomic: GAGAAGGCACAGGAAGCAGgttcacttga ... tctgattcagATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTG
EST: TTCAAGTGAAGCCAATAATGTGCCTGGAACCGAGAAGGCACAGGAAGCAG ATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTGEST: gi|101400819|gb|EB822107.1|EB822107
genomic: TTCAAGTGAAGCCAATAATGTGCCTGGAACCGAGAAGGCACAGGAAGCAGgttcacttga ... tctgattcagATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTG
EST: TTCAAGTGAAGCCAATAATGTGCCTGGAACCGAGAAGGCACAGGAAGCAG ATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTG
genomic: TTCAAGTGAAGCCAATAATGTGCCTGGAACCGAGAAGGCACAGGAAGCAGgttcacttga ... tctgattcagATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTG
atatccaagtctaacaggaagaggacagctaaacgaactgcattttctgattcagATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTGAGAAAGACGAATCATTGAAGTCTAAAGATGAAGAGTTTAAAGATATGAA
cattttct CT-rich tract
attttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcacttgattctatatccaagtctaacaggaagaggacagctaaacgaactgcattttctgattcagATTCAGAAGACCTAGACCTATCAAAGGAGGACCTTGTGAAGCTGCTTCTTGAGAAAGACGAATCATTGAAGTCTAAAGATGAAGAGTTTAAAGATATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA