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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccccaaccaaacacattccttttccatttgctgcaagctgcttgattccaaacctatttatttgtaatgttcgatggtgtttgtggtgcagCCTGATGAAACATACTATATCATTGATATGATCTGTTGGCGAGGCTATTCACTATATGACTGCACCGCCGAGTTCAGGTTTTTCTGGGTCAACTCTAAGA

Basic information

species Zea mays
transcript GRMZM2G002361_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G002361_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g01130.1 (Oryza sativa), 3'ss of exon 2
gtaccccaaccaaacacattccttttccatttgctgcaagctgcttgattccaaacctatttatttgtaatgtt-cgatggtgtttgtggtgcagCCTGATGAAACATACTATATCATTGATATGATCTGTTGGCGAGGCTATTCACTATATGACTGCACCGCCGAGTTCAGGTTTTTCTGGGTCAACTCTAAGA
|| |  | |||  |  ||| | | ||    |  ||      |  ||  ||     | | || |||  ||| |||    |     ||||| ||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||  | || ||||||||||| ||||| ||||| || ||||| || |||||| 
gtgctaccacctgatccatccttcttgacctgccttttctttctttcgtttttggcttgttcattcataacgttgtcgtctctcttgtgctgcagCCTGATGAAACATATTACATCATTGATATGATCTGTTGGAGAGGCTACTCCTTGTACGACTGCACCGCTGAGTTTAGGTTCTTTTGGGTGAATTCTAAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348284|gb|DN215257.1|DN215257
EST:     TTTCTGGACCAGCAAGCTCGTACTCCATCCTCGATTGCATTTTTCACGAG                         CCTGATGAAACATACTATATCATTGATATGATCTGTTGGCGAGGCTATTCA
genomic: TTTCTGGACCAGCAAGCTCGTACTCCATCCTCGATTGCATTTTTCACGAGgtaccccaac ... tgtggtgcagCCTGATGAAACATACTATATCATTGATATGATCTGTTGGCGAGGCTATTCA
EST: gi|149108582|gb|EE189724.2|EE189724
EST:     TTTCTGGACCAGCAAGCTCGTACTCCATCCTCGATTGCATTTTTCACGAG                         CCTGATGAAACATACTATATCATTGATATGATCTGTTGGCGAGGCTATTCA
genomic: TTTCTGGACCAGCAAGCTCGTACTCCATCCTCGATTGCATTTTTCACGAGgtaccccaac ... tgtggtgcagCCTGATGAAACATACTATATCATTGATATGATCTGTTGGCGAGGCTATTCA
EST: gi|71314104|gb|DR793668.1|DR793668
EST:     TTTCTGGACCAGCAAGCTCGTACTCCATCCTCGATTGCATTTTTCACGAG                         CCTGATGAAACATACTATATCATTGATATGATCTGTTGGCGAGGCTATTCA
genomic: TTTCTGGACCAGCAAGCTCGTACTCCATCCTCGATTGCATTTTTCACGAGgtaccccaac ... tgtggtgcagCCTGATGAAACATACTATATCATTGATATGATCTGTTGGCGAGGCTATTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgcttgattccaaacctatttatttgtaatgttcgatggtgtttgtggtgcagCCTGATGAAACATACTATATCATTGATATGATCTGTTGGCGAGGCTATTCACTATATGACTGCACCGCCGAGTTCAGGTTTTTCTGGGTCAACTCTAAGA
   gcttgat  putative branch site (score: 5)
                  tatttatttgtaatgt  TA-rich tract