1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttatcctctatcttatttattggtgctgtggttattcagtagggaatgctctatgatacctttgcttctaccagtaattcatattggccataattttgtgtgttgctcagGAAGGACAACGGTTCTTTCAAGAAGTTCGCTCCAAGGTCAGGCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG
species | Zea mays |
transcript | GRMZM2G001850_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTAAGGATTGACATGGCTACCGAGAGGGGTGCATACACTCCTAGCAGCGG GAAGGACAACGGTTCTTTCAAGAAGTTCGCTCCAAGGTCAGGCAACACCGTEST: gi|61118398|gb|DN559359.1|DN559359
genomic: CTAAGGATTGACATGGCTACCGAGAGGGGTGCATACACTCCTAGCAGCGGgttatcctct ... tgttgctcagGAAGGACAACGGTTCTTTCAAGAAGTTCGCTCCAAGGTCAGGCAACACCGT
EST: CTAAGGATTGACATGGCTACCGAGAGGGGTGCATACACTCCTAGCAGCGG GAAGGACAACGGTTCTTTCAAGAAGTTCGCTCCAAGGTCAGGCAACACCGTEST: gi|32850141|gb|CD989822.1|CD989822
genomic: CTAAGGATTGACATGGCTACCGAGAGGGGTGCATACACTCCTAGCAGCGGgttatcctct ... tgttgctcagGAAGGACAACGGTTCTTTCAAGAAGTTCGCTCCAAGGTCAGGCAACACCGT
EST: CTAAGGATTGACATGGCTACCGAGAGGGGTGCATACACTCCTAGCAGCGG GAAGGACAACGGTTCTTTCAAGAAGTTCGCTCCAAGGTCAGGCAACACCGTEST: gi|61118397|gb|DN559358.1|DN559358
genomic: CTAAGGATTGACATGGCTACCGAGAGGGGTGCATACACTCCTAGCAGCGGgttatcctct ... tgttgctcagGAAGGACAACGGTTCTTTCAAGAAGTTCGCTCCAAGGTCAGGCAACACCGT
EST: CTAAGGATTGACATGGCTACCGAGAGGGGTGCATACACTCCTAGCAGCGG GAAGGACAACGGTTCTTTCAAGAAGTTCGCTCCAAGGTCAGGCAACACCGT
genomic: CTAAGGATTGACATGGCTACCGAGAGGGGTGCATACACTCCTAGCAGCGGgttatcctct ... tgttgctcagGAAGGACAACGGTTCTTTCAAGAAGTTCGCTCCAAGGTCAGGCAACACCGT
atacctttgcttctaccagtaattcatattggccataattttgtgtgttgctcagGAAGGACAACGGTTCTTTCAAGAAGTTCGCTCCAAGGTCAGGCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG
taattcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatcctctatcttatttattggtgctgtggttattcagtagggaatgctctatgatacctttgcttctaccagtaattcatattggccataattttgtgtgttgctcagGAAGGACAACGGTTCTTTCAAGAAGTTCGCTCCAAGGTCAGGCAACACCGTGTTTATTAAGGGCTTTGACACCTCTGGTGGAGAGGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA