1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgcagttttttgggtgagattttattagaatccacaaaattgtttcttgccattttgatgccttgtattttcttaactaatatattctgtaacaaaatagGTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATCGATGGCCGTGGGAAGTCGGTGGTTTGCGAGGCGGTAATCAAGGAAGAAGTTGTGAA
species | Zea mays |
transcript | GRMZM2G001645_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGACTACCTCCAGGCTGACTTCCCTGATATGGATGTCATCAGCATATCAG GTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATCGATGGCCEST: gi|67011977|gb|CO440726.1|CO440726
genomic: GGACTACCTCCAGGCTGACTTCCCTGATATGGATGTCATCAGCATATCAGgtttccccat ... aacaaaatagGTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATCGATGGCC
EST: GGACTACCTCCAGGCTGACTTCCCTGATATGGATGTCATCAGCATATCAG GTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATCGATGGCCEST: gi|91873059|gb|EB403016.1|EB403016
genomic: GGACTACCTCCAGGCTGACTTCCCTGATATGGATGTCATCAGCATATCAGgtttccccat ... aacaaaatagGTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATCGATGGCC
EST: GGACTACCTCCAGGCTGACTTCCCTGATATGGATGTCATCAGCATATCAG GTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATCGATGGCC
genomic: GGACTACCTCCAGGCTGACTTCCCTGATATGGATGTCATCAGCATATCAGgtttccccat ... aacaaaatagGTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATCGATGGCC
cttgccattttgatgccttgtattttcttaactaatatattctgtaacaaaatagGTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATCGATGGCCGTGGGAAGTCGGTGGTTTGCGAGGCGGTAATCAAGGAAGAAGTTGTGAA
tattttcttaactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcagttttttgggtgagattttattagaatccacaaaattgtttcttgccattttgatgccttgtattttcttaactaatatattctgtaacaaaatagGTAACTTCTGTTCTGACAAGAAGTCAGCTGCTGTGAACTGGATCGATGGCCGTGGGAAGTCGGTGGTTTGCGAGGCGGTAATCAAGGAAGAAGTTGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
tgcagtt
- - - - - - - - - - - - - - - -ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccttg