1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatgagagtggcattctctgccagtgtcttactattacacactaaatgttttttgagatgtttatacttgcattataactaaagtaacaccgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACACACACCTTGGTGGTGATGACTTCGATAAG
species | Zea mays |
transcript | GRMZM2G001500_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTG TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACAEST: gi|211323721|gb|FL059667.1|FL059667
genomic: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagt ... cgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
EST: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTG TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACAEST: gi|211323718|gb|FL059664.1|FL059664
genomic: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagt ... cgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
EST: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTG TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACAEST: gi|211323720|gb|FL059666.1|FL059666
genomic: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagt ... cgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
EST: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTG TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACAEST: gi|211323719|gb|FL059665.1|FL059665
genomic: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagt ... cgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
EST: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTG TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACAEST: gi|211323722|gb|FL059668.1|FL059668
genomic: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagt ... cgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
EST: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTG TATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
genomic: TGAAACAATTCTAGTGTTTGATTTGGGAGGCGGAACCTTTGATGTATCTGgtaaggaagt ... cgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACA
atgttttttgagatgtttatacttgcattataactaaagtaacaccgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACACACACCTTGGTGGTGATGACTTCGATAAG
aagtaac putative branch site (score: 272)
attataactaaagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgagagtggcattctctgccagtgtcttactattacacactaaatgttttttgagatgtttatacttgcattataactaaagtaacaccgtcatgcagTATTGGAAGTTGGTGATGGTGTGTTTGAGGTGCTTTCCACATCTGGTGACACACACCTTGGTGGTGATGACTTCGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - -ggcattc
- - - - - - - - tctgcca
- - - - - - - - - - - - - - - - - - - acactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa