Sequence
atgc intronic sequence ATGC exonic sequencegtgcgtgttctgaaacatgcatgagatgcataggtagtttcttcatgccatctctgctgttggttttgctgaagtaatgttgggaatttcgcagATGTCGGTTGAGTTTCAGGTGCCTTCCCCACTGGTGCCGACTAGGGATAGCTATTTCGTGAGGTACTGCAAGCAGAACGCGGATGGAACATGGGCCGTCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G001289_T03 (Zea mays), 3'ss of exon 2
lower sequence: EFJ19972 (Selaginella moellendorffii), 3'ss of exon 6
------------------------gtgcgtgttctgaaacatgcatgagatgcataggtagtttcttca--tgccatctctgctgttgg-ttttgctgaagtaatgttgggaatttcgcagATGTCGGTTGAGTTTCAGGTGCCTTCCCCACTGGTGCCGACTAGGGATAGCTATTTCGTGAGGTACTGCAAGCAGAACGCGGATGGAACATGGGCCGTCG
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gtacgtgctcatccaaaccagagaaaaagcttttttgtttttgttctctatctggaagaactttgcgtgattgctttcgatgcttctaaactttgtttttgtctttgatcttccttcgcagATGTATGCCGAGATGCAAGTCTTGTCGCCTCTGGTTCCAACTCGCGAGTTTTACTTCGTGAGGTACTGCAAGCAGCACGCGGATGGAGTCTGGGGAATCG
upper sequence: GRMZM2G001289_T03 (Zea mays), 3'ss of exon 2
lower sequence: EFJ10492 (Selaginella moellendorffii), 3'ss of exon 6
------------------------gtgcgtgttctgaaacatgcatgagatgcataggtagtttcttca--tgccatctctgctgttgg-ttttgctgaagtaatgttgggaatttcgcagATGTCGGTTGAGTTTCAGGTGCCTTCCCCACTGGTGCCGACTAGGGATAGCTATTTCGTGAGGTACTGCAAGCAGAACGCGGATGGAACATGGGCCGTCG
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gtacgtgctcatccaaaccagaaaaaaagcttctttgtttttgttctctatctggaagaactttgcgtgattgctttcgatgcttctaaaccttgtttttgtatttgatcttccttcgcagATGTATGCCGAGATGCAAGTCTTGTCGCCTCTGGTTCCAACTCGCGAGTTTTACTTCGTGAGGTACTGCAAGCAGCACGCGGATGGAGTCTGGGGAATCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|160481559|gb|EY254391.1|EY254391EST: AGGTGCTGTCCACCGGCGTGGCTGGGAACTACAATGGCGCATTGCAAGTG ATGTCGGTTGAGTTTCAGGTGCCTTCCCCACTGGTGCCGACTAGGGATAGC
genomic: AGGTGCTGTCCACCGGCGTGGCTGGGAACTACAATGGCGCATTGCAAGTGgtgcgtgttc ... aatttcgcagATGTCGGTTGAGTTTCAGGTGCCTTCCCCACTGGTGCCGACTAGGGATAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttcatgccatctctgctgttggttttgctgaagtaatgttgggaatttcgcagATGTCGGTTGAGTTTCAGGTGCCTTCCCCACTGGTGCCGACTAGGGATAGCTATTTCGTGAGGTACTGCAAGCAGAACGCGGATGGAACATGGGCCGTCG
aagtaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcgtgttctgaaacatgcatgagatgcataggtagtttcttcatgccatctctgctgttggttttgctgaagtaatgttgggaatttcgcagATGTCGGTTGAGTTTCAGGTGCCTTCCCCACTGGTGCCGACTAGGGATAGCTATTTCGTGAGGTACTGCAAGCAGAACGCGGATGGAACATGGGCCGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA