1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctttccatgcgaaatgggggctgcgcagtgtagcattgctttccagggaaatatgatgcccaaatgctaaaaaaaattattttcttgcggttgggtgcagGTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCACCCATTGCTCTTTGCTGCTTTGTACAAGACCCTGGCGCTACTCCATATG
species | Zea mays |
transcript | GRMZM2G000937_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTGATGAGCACTGGCAGTGTCTCGAGGTCGCCCACCGCGTCGCCTTCGG GTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGNTATCTCCAEST: gi|71447078|gb|DR828128.1|DR828128
genomic: CCTGATGAGCACTGGCAGTGTCTCGAGGTCGCCCACCGCGTCGCCTTCGGgtaacctcgc ... ttgggtgcagGTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCA
EST: CCTGATGAGCACTGGCAGTGTCTCGAGGTCGCCCACCGCGTCGCCTTCGG GTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCAEST: gi|148966855|gb|EE017969.2|EE017969
genomic: CCTGATGAGCACTGGCAGTGTCTCGAGGTCGCCCACCGCGTCGCCTTCGGgtaacctcgc ... ttgggtgcagGTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCA
EST: CCTGATGAGCACTGGCAGTGTCTCGAGGTCGCCCACCGCGTCGCCTTCGG GTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCAEST: gi|76916624|gb|DV166470.1|DV166470
genomic: CCTGATGAGCACTGGCAGTGTCTCGAGGTCGCCCACCGCGTCGCCTTCGGgtaacctcgc ... ttgggtgcagGTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCA
EST: CCTGATGAGCACTGGCAGTGTCTCGAGGTCGCCCACCGCGTCGCCTTCGG GTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCAEST: gi|78117459|gb|DV535846.1|DV535846
genomic: CCTGATGAGCACTGGCAGTGTCTCGAGGTCGCCCACCGCGTCGCCTTCGGgtaacctcgc ... ttgggtgcagGTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCA
EST: CCTGATGAGCACTGGCAGTGTCTCGAGGTCGCCCACCGCGTCGCCTTCGG GTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCA
genomic: CCTGATGAGCACTGGCAGTGTCTCGAGGTCGCCCACCGCGTCGCCTTCGGgtaacctcgc ... ttgggtgcagGTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCA
gggaaatatgatgcccaaatgctaaaaaaaattattttcttgcggttgggtgcagGTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCACCCATTGCTCTTTGCTGCTTTGTACAAGACCCTGGCGCTACTCCATATG
tgctaaa putative branch site (score: 43)
aaatgctaaaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttccatgcgaaatgggggctgcgcagtgtagcattgctttccagggaaatatgatgcccaaatgctaaaaaaaattattttcttgcggttgggtgcagGTATGGTCATCTCACGTGGGAGTGGAAGCGGGGCCTGCGCAGTTATCTCCACCCATTGCTCTTTGCTGCTTTGTACAAGACCCTGGCGCTACTCCATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT