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...tttaccttcttgaaaaaaaattaagctttttatctgctttgccttatattgcatatggctgccattggtgctgaacttgctgcgctactgcttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGAGGCCCTTTATCCATGGCACCCGTACATCTGTTGATCACGGCATGATCGG
species | Zea mays |
transcript | GRMZM2G000842_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGAEST: gi|71435856|gb|DR816906.1|DR816906
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
EST: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGAEST: gi|76015224|gb|DT942394.1|DT942394
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
EST: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGAEST: gi|91869980|gb|EB400639.1|EB400639
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
EST: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGAEST: gi|71439738|gb|DR820788.1|DR820788
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
EST: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaccttcttgaaaaaaaattaagctttttatctgctttgccttatattgcatatggctgccattggtgctgaacttgctgcgctactgcttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGAGGCCCTTTATCCATGGCACCCGTACATCTGTTGATCACGGCATGATCGG
- - -cttcttg
- - - - - - aaaaaaa
- - - - - - - - - - - - - - - - -ctgcttt
- - - - - - - - - - - - - - - - - - - - - - - -attgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctactg