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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttaccttcttgaaaaaaaattaagctttttatctgctttgccttatattgcatatggctgccattggtgctgaacttgctgcgctactgcttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGAGGCCCTTTATCCATGGCACCCGTACATCTGTTGATCACGGCATGATCGG

Basic information

species Zea mays
transcript GRMZM2G000842_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000842_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g37170.3 (Oryza sativa), 3'ss of exon 1
tttaccttcttgaaaaaaaattaagctttttatctgctttgccttatattgcatatggctg-------ccattggtgctgaacttgctgcgctactgcttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGAGGCCCTTTATCCATGGCACCCGTAC------ATCTGTTGATCACGGCATGATCGG-
   || ||| ||||||    || || |||||||||| |   || ||||||||||||||||        |||  |||| ||||     ||| ||||||||||| |||||||||||||||||||||| ||||||      |||||||||||||||||| |||||||| |||||||||||| || |         ||| ||||| |||||||||   
---acattcctgaaaag---ttcag-tttttatctgttcgtccatatattgcatatggctattgactaccacaggtgttgaatgctgtgctctactgcttggtccagGGAGTTGCAACCTGCAGCTGCTGCT------TACTTTGGTGAGTTGGAGAAGGCCCTT-ATCCATGGCACCAGTGCTGGTGCTGGTGTCGATCATGGCATGATCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88758005|gb|DY542146.1|DY542146
EST:     GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT                         GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
EST: gi|71435856|gb|DR816906.1|DR816906
EST:     GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT                         GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
EST: gi|71439738|gb|DR820788.1|DR820788
EST:     GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT                         GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
EST: gi|91869980|gb|EB400639.1|EB400639
EST:     GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT                         GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
EST: gi|76015224|gb|DT942394.1|DT942394
EST:     GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTT                         GGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA
genomic: GCGTGTGGAACCCAAAGGCGCGCTTCTGCCGCACAACCTGCCAATTTCTTgtactgctgc ... cttggcccagGGAGTTGCAACCTGCAGCAGCTGCTCCTTATTACTTTGGTGAGTTGGAGGA