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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagataatcctattggactagcttggataatttgcattggtagttggcagcagttatgaaatactatggatctaaattcaaaaaattgcagGAATTACCTCTGCTTCAGGAATTGCAGCAGAACTAGGCATTCCGCTAACCCATCGAGGTGTTGCTACCAGGTAAGATTAGCCTTCTGTAATTTTATTCTA

Basic information

species Zea mays
transcript GRMZM2G000739_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000739_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g44050.1 (Oryza sativa), 3'ss of exon 3
gta-gataatcctattggactagcttggataatttgcattggtagttggcagcagttatgaaatactatggatctaaattcaaaaaattgcagGAATTACCTCTGCTTCAGGAATTGCAGCAGAACTAGGCATTCCGCTAACCCATCGAGGTGTTGCTACCAGGTAAGATTAGCCTTCTGTAATTTTATTCTA
|||  | ||||    |    ||||||| ||| | |||| |     |||  |       ||| ||   |    | | |||     ||| |||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||                              
gtataacaatcactatatggtagcttgaatactctgcacttccttttgtgac------tgagatgtgaattgtgtgaat----gaaaatgcagGAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTGTTGCTACCAG------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78090157|gb|DV518531.1|DV518531
EST:     AGAGATGGATTTCTTACAGCAACAGGGAATCAAAGTTGAAATTATCCCAG                         GAATTACCTCTGCTTCAGGAATTGCAGCAGAACTAGGCATTCCGCTAACCC
genomic: AGAGATGGATTTCTTACAGCAACAGGGAATCAAAGTTGAAATTATCCCAGgtagataatc ... aaaattgcagGAATTACCTCTGCTTCAGGAATTGCAGCAGAACTAGGCATTCCGCTAACCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtagttggcagcagttatgaaatactatggatctaaattcaaaaaattgcagGAATTACCTCTGCTTCAGGAATTGCAGCAGAACTAGGCATTCCGCTAACCCATCGAGGTGTTGCTACCAGGTAAGATTAGCCTTCTGTAATTTTATTCTA
                                 atctaaa  putative branch site (score: 3)
                                 atctaaattcaaaaaa  TA-rich tract